CircRNA Information

General Information
circRNA Basic Information
CircID chr9:137273578|137273715
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCCCCCAGAAATTATTATATCGTCCCCAGCTGCTGGTCACAGACAGGGCTGAGCAGTCCAGAGAGGCTGTGGCCCACAAAGCCCCAAGTATTGGCTCCATAGCACAAATGCCTGTGTCCATCTGAGCTACATCCAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:137273578|137273715 hsa-miR-374a-5p 0 0 1
chr9:137273578|137273715 hsa-miR-374a-3p 0 0 1
chr9:137273578|137273715 hsa-miR-326 0 0 1
chr9:137273578|137273715 hsa-miR-422a 0 0 1
chr9:137273578|137273715 hsa-miR-625-5p 0 0 1
chr9:137273578|137273715 hsa-miR-625-3p 0 0 1
chr9:137273578|137273715 hsa-miR-634 0 0 1
chr9:137273578|137273715 hsa-miR-637 1 1 1
chr9:137273578|137273715 hsa-miR-646 0 0 1
chr9:137273578|137273715 hsa-miR-890 0 0 1
chr9:137273578|137273715 hsa-miR-374b-5p 0 0 1
chr9:137273578|137273715 hsa-miR-374b-3p 0 0 1
chr9:137273578|137273715 hsa-miR-1275 0 0 1
chr9:137273578|137273715 hsa-miR-1288-5p 0 0 1
chr9:137273578|137273715 hsa-miR-1288-3p 0 0 1
chr9:137273578|137273715 hsa-miR-146b-3p 0 0 1
chr9:137273578|137273715 hsa-miR-339-5p 0 1 1
chr9:137273578|137273715 hsa-miR-1207-3p 0 0 1
chr9:137273578|137273715 hsa-miR-767-3p 0 0 1
chr9:137273578|137273715 hsa-miR-330-5p 0 0 1
chr9:137273578|137273715 hsa-miR-369-3p 0 0 1
chr9:137273578|137273715 hsa-miR-378 0 0 1
chr9:137273578|137273715 hsa-miR-1269 0 0 1
chr9:137273578|137273715 hsa-miR-218 0 0 1
chr9:137273578|137273715 hsa-miR-762 1 0 0
chr9:137273578|137273715 hsa-miR-2113 0 1 0
chr9:137273578|137273715 hsa-miR-1291 1 1 0
chr9:137273578|137273715 hsa-miR-1295a 1 0 0
chr9:137273578|137273715 hsa-miR-1269a 0 1 0
chr9:137273578|137273715 hsa-miR-3137 1 0 0
chr9:137273578|137273715 hsa-miR-3183 0 1 0
chr9:137273578|137273715 hsa-miR-4296 0 1 0
chr9:137273578|137273715 hsa-miR-4322 0 1 0
chr9:137273578|137273715 hsa-miR-4265 1 1 0
chr9:137273578|137273715 hsa-miR-4421 1 1 0
chr9:137273578|137273715 hsa-miR-4505 1 0 0
chr9:137273578|137273715 hsa-miR-1269b 0 1 0
chr9:137273578|137273715 hsa-miR-4530 0 1 0
chr9:137273578|137273715 hsa-miR-5787 1 0 0
chr9:137273578|137273715 hsa-miR-6085 1 0 0
chr9:137273578|137273715 hsa-miR-6090 1 0 0
chr9:137273578|137273715 hsa-miR-8089 1 0 0
chr9:137273578|137273715 hsa-miR-12115 1 0 0
chr9:137273578|137273715 hsa-miR-4731-5p 1 1 0
chr9:137273578|137273715 hsa-miR-4665-3p 1 0 0
chr9:137273578|137273715 hsa-miR-6857-5p 1 0 0
chr9:137273578|137273715 hsa-miR-1227-5p 1 0 0
chr9:137273578|137273715 hsa-miR-7114-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6776-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6817-3p 0 1 0
chr9:137273578|137273715 hsa-miR-7108-5p 1 1 0
chr9:137273578|137273715 hsa-miR-6772-5p 1 0 0
chr9:137273578|137273715 hsa-miR-185-3p 1 0 0
chr9:137273578|137273715 hsa-miR-6805-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6827-5p 1 0 0
chr9:137273578|137273715 hsa-miR-193b-5p 1 1 0
chr9:137273578|137273715 hsa-miR-7156-3p 1 0 0
chr9:137273578|137273715 hsa-miR-3191-3p 1 0 0
chr9:137273578|137273715 hsa-miR-1225-5p 1 0 0
chr9:137273578|137273715 hsa-miR-654-5p 1 0 0
chr9:137273578|137273715 hsa-miR-3120-5p 0 1 0
chr9:137273578|137273715 hsa-miR-6508-3p 0 1 0
chr9:137273578|137273715 hsa-miR-518c-5p 0 1 0
chr9:137273578|137273715 hsa-miR-654-3p 0 1 0
chr9:137273578|137273715 hsa-miR-4717-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6779-3p 0 1 0
chr9:137273578|137273715 hsa-miR-4763-3p 1 0 0
chr9:137273578|137273715 hsa-miR-6870-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6726-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6756-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6813-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6763-5p 1 0 0
chr9:137273578|137273715 hsa-miR-5189-5p 1 0 0
chr9:137273578|137273715 hsa-miR-4726-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6883-5p 1 0 0
chr9:137273578|137273715 hsa-miR-3198 1 0 0
chr9:137273578|137273715 hsa-miR-6855-5p 1 0 0
chr9:137273578|137273715 hsa-miR-4700-5p 1 1 0
chr9:137273578|137273715 hsa-miR-5591-5p 1 0 0
chr9:137273578|137273715 hsa-miR-6762-5p 1 0 0
chr9:137273578|137273715 hsa-miR-4723-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:137273578|137273715
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MLVTDRAEQSREAVAHKAPSIGSIAQMPVSI
Nucleotide Sequence CTGCTGGTCACAGACAGGGCTGAGCAGTCCAGAGAGGCTGTGGCCCACAAAGCCCCAAGTATTGGCTCCATAGCACAAATGCCTGTGTCCATCTGA
CircID chr9:137273578|137273715
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MCYGANTWGFVGHSLSGLLSPVCDQQLGTI
Nucleotide Sequence TTGTGCTATGGAGCCAATACTTGGGGCTTTGTGGGCCACAGCCTCTCTGGACTGCTCAGCCCTGTCTGTGACCAGCAGCTGGGGACGATATAA
CircID chr9:137273578|137273715
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence LDVAQMDTGICAMEPILGALWATASLDCSALSVTSSWGRYNNFWG
Nucleotide Sequence TTGGATGTAGCTCAGATGGACACAGGCATTTGTGCTATGGAGCCAATACTTGGGGCTTTGTGGGCCACAGCCTCTCTGGACTGCTCAGCCCTGTCTGTGACCAGCAGCTGGGGACGATATAATAATTTCTGGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab