CircRNA Information

General Information
circRNA Basic Information
CircID chr9:19371756|19372097
Strand +
CircType exon
Host Gene ENSG00000137145.19;
Algorism CIRI2;
Sequence CTTTCAAGAATCTCTGAAGACAGACTATTGTATGCAATTCCATATTCATTGTCAAATGCCTCTGAAAGAAATTTTCAAAAATGAAGTTGTAATTTGTTAAGAAAGACAACAGCCGTTCATTTCAAATTGGTATTGAGTCAAATTATATGTATTTGAACTATATATTTAGAAGTAGAAATCTTTTAAATCTTTTATACATACCAGCTACATTTTTAAAAATTACTTTTGAAAATAAAATGTAAAACTTCCTTTCATAATCTTTTATTAACCAACTTACCAATATCAATATTCTCTCTTCCTAGAGACACTAATGATAAGAAGAGGATTTCTCTGTATAAACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:19371756|19372097 hsa-miR-382-5p 0 0 1
chr9:19371756|19372097 hsa-miR-382-3p 0 0 1
chr9:19371756|19372097 hsa-miR-448 0 0 1
chr9:19371756|19372097 hsa-miR-488-5p 0 0 1
chr9:19371756|19372097 hsa-miR-488-3p 0 0 1
chr9:19371756|19372097 hsa-miR-511-5p 0 0 1
chr9:19371756|19372097 hsa-miR-511-3p 0 0 1
chr9:19371756|19372097 hsa-miR-495-5p 0 0 1
chr9:19371756|19372097 hsa-miR-495-3p 0 0 1
chr9:19371756|19372097 hsa-miR-526b-5p 0 0 1
chr9:19371756|19372097 hsa-miR-526b-3p 0 0 1
chr9:19371756|19372097 hsa-miR-539-5p 0 0 1
chr9:19371756|19372097 hsa-miR-539-3p 0 0 1
chr9:19371756|19372097 hsa-miR-559 0 0 1
chr9:19371756|19372097 hsa-miR-568 0 0 1
chr9:19371756|19372097 hsa-miR-579-5p 0 0 1
chr9:19371756|19372097 hsa-miR-579-3p 0 0 1
chr9:19371756|19372097 hsa-miR-593-5p 0 0 1
chr9:19371756|19372097 hsa-miR-593-3p 0 0 1
chr9:19371756|19372097 hsa-miR-607 0 0 1
chr9:19371756|19372097 hsa-miR-887-5p 0 0 1
chr9:19371756|19372097 hsa-miR-887-3p 0 0 1
chr9:19371756|19372097 hsa-miR-548j-5p 0 0 1
chr9:19371756|19372097 hsa-miR-548j-3p 0 0 1
chr9:19371756|19372097 hsa-miR-1305 0 0 1
chr9:19371756|19372097 hsa-miR-1251-5p 0 0 1
chr9:19371756|19372097 hsa-miR-1251-3p 0 0 1
chr9:19371756|19372097 hsa-miR-548n 0 0 1
chr9:19371756|19372097 hsa-miR-338-5p 0 0 1
chr9:19371756|19372097 hsa-miR-513a-3p 0 0 1
chr9:19371756|19372097 hsa-miR-548b-5p 0 0 1
chr9:19371756|19372097 hsa-miR-548d-5p 0 0 1
chr9:19371756|19372097 hsa-miR-337-5p 0 0 1
chr9:19371756|19372097 hsa-miR-590-3p 0 0 1
chr9:19371756|19372097 hsa-miR-548c-3p 0 0 1
chr9:19371756|19372097 hsa-miR-548c-5p 0 0 1
chr9:19371756|19372097 hsa-miR-548a-5p 0 0 1
chr9:19371756|19372097 hsa-miR-548i 0 0 1
chr9:19371756|19372097 hsa-miR-153 0 0 1
chr9:19371756|19372097 hsa-miR-514 0 0 1
chr9:19371756|19372097 hsa-miR-203 0 0 1
chr9:19371756|19372097 hsa-miR-548h 0 0 1
chr9:19371756|19372097 hsa-miR-11400 0 1 0
chr9:19371756|19372097 hsa-miR-6830-3p 0 1 0
chr9:19371756|19372097 hsa-miR-4774-5p 0 1 0
chr9:19371756|19372097 hsa-miR-1244 1 1 0
chr9:19371756|19372097 hsa-miR-5583-3p 0 1 0
chr9:19371756|19372097 hsa-miR-6731-5p 0 1 0
chr9:19371756|19372097 hsa-miR-1185-1-3p 0 1 0
chr9:19371756|19372097 hsa-miR-1185-2-3p 0 1 0
chr9:19371756|19372097 hsa-miR-3059-3p 1 1 0
chr9:19371756|19372097 hsa-miR-491-3p 0 1 0
chr9:19371756|19372097 hsa-let-7a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:19371756|19372097
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence MKIKCKTSFHNLLLTNLPISIFSLPRDTNDKKRISLYKL
Nucleotide Sequence TTGAAAATAAAATGTAAAACTTCCTTTCATAATCTTTTATTAACCAACTTACCAATATCAATATTCTCTCTTCCTAGAGACACTAATGATAAGAAGAGGATTTCTCTGTATAAACTC
CircID chr9:19371756|19372097
ORF Type ORF2
Protein Length 28
Nucleotide Length 87
Protein Sequence MKTDYCMQFHIHCQMPLKEIFKNEVVIC
Nucleotide Sequence CTGAAGACAGACTATTGTATGCAATTCCATATTCATTGTCAAATGCCTCTGAAAGAAATTTTCAAAAATGAAGTTGTAATTTGTTAA
CircID chr9:19371756|19372097
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MYLNYIFRSRNLLNLLYIPATFLKITFENKM
Nucleotide Sequence ATGTATTTGAACTATATATTTAGAAGTAGAAATCTTTTAAATCTTTTATACATACCAGCTACATTTTTAAAAATTACTTTTGAAAATAAAATGTAA
CircID chr9:19371756|19372097
ORF Type ORF4
Protein Length 42
Nucleotide Length 129
Protein Sequence MILVSWLIKDYERKFYILFSKVIFKNVAGMYKRFKRFLLLNI
Nucleotide Sequence TTGATATTGGTAAGTTGGTTAATAAAAGATTATGAAAGGAAGTTTTACATTTTATTTTCAAAAGTAATTTTTAAAAATGTAGCTGGTATGTATAAAAGATTTAAAAGATTTCTACTTCTAAATATATAG
CircID chr9:19371756|19372097
ORF Type ORF5
Protein Length 37
Nucleotide Length 111
Protein Sequence MLSFLTNYNFIFENFFQRHLTMNMELHTIVCLQRFLK
Nucleotide Sequence CTGTTGTCTTTCTTAACAAATTACAACTTCATTTTTGAAAATTTCTTTCAGAGGCATTTGACAATGAATATGGAATTGCATACAATAGTCTGTCTTCAGAGATTCTTGAAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab