CircRNA Information

General Information
circRNA Basic Information
CircID chr9:33472028|33472265
Strand -
CircType exon
Host Gene ENSG00000165271.15;
Algorism CIRI2;
Sequence CCTCACAACCCGCTGGTTGACCTCCCGTAGGAAGGCATCAATCCGATCCTTCTTCTTCTCTGACAGCCTTACTTCCTTTAGTAGCTCCTCTACCTGTAAGAGAGGGTAGAAGACAGTCCATCAGCCTCAGGGTCCCAGGTACACACCTCGAACAAAAGCTGCAGACACTCAACAGTACCTGTAAACGAAGCAAGCTGGAGTGGAACAAGATCTCAGTCTCCCGAAGGCGATTAAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:33472028|33472265 hsa-miR-375-5p 0 0 1
chr9:33472028|33472265 hsa-miR-375-3p 0 0 1
chr9:33472028|33472265 hsa-miR-346 0 0 1
chr9:33472028|33472265 hsa-miR-452-5p 0 0 1
chr9:33472028|33472265 hsa-miR-452-3p 0 0 1
chr9:33472028|33472265 hsa-miR-504-5p 0 0 1
chr9:33472028|33472265 hsa-miR-504-3p 0 0 1
chr9:33472028|33472265 hsa-miR-552-5p 0 0 1
chr9:33472028|33472265 hsa-miR-552-3p 0 0 1
chr9:33472028|33472265 hsa-miR-600 0 1 1
chr9:33472028|33472265 hsa-miR-619-5p 0 0 1
chr9:33472028|33472265 hsa-miR-619-3p 0 0 1
chr9:33472028|33472265 hsa-miR-632 0 0 1
chr9:33472028|33472265 hsa-miR-1301-5p 0 0 1
chr9:33472028|33472265 hsa-miR-1301-3p 0 0 1
chr9:33472028|33472265 hsa-miR-766-5p 0 0 1
chr9:33472028|33472265 hsa-miR-766-3p 0 0 1
chr9:33472028|33472265 hsa-miR-708-5p 0 0 1
chr9:33472028|33472265 hsa-miR-708-3p 0 0 1
chr9:33472028|33472265 hsa-miR-877-5p 0 0 1
chr9:33472028|33472265 hsa-miR-877-3p 0 0 1
chr9:33472028|33472265 hsa-miR-1205 0 0 1
chr9:33472028|33472265 hsa-miR-1294 0 0 1
chr9:33472028|33472265 hsa-miR-1253 1 0 1
chr9:33472028|33472265 hsa-miR-1267 0 0 1
chr9:33472028|33472265 hsa-miR-1288-5p 0 0 1
chr9:33472028|33472265 hsa-miR-1288-3p 0 0 1
chr9:33472028|33472265 hsa-miR-485-5p 0 0 1
chr9:33472028|33472265 hsa-miR-1184 1 0 1
chr9:33472028|33472265 hsa-miR-574-5p 1 0 1
chr9:33472028|33472265 hsa-miR-508-5p 0 0 1
chr9:33472028|33472265 hsa-miR-532-5p 0 0 1
chr9:33472028|33472265 hsa-miR-28-5p 0 0 1
chr9:33472028|33472265 hsa-miR-125a-5p 0 0 1
chr9:33472028|33472265 hsa-miR-125b 0 0 1
chr9:33472028|33472265 hsa-miR-1269 0 0 1
chr9:33472028|33472265 hsa-miR-638 1 0 0
chr9:33472028|33472265 hsa-miR-661 1 1 0
chr9:33472028|33472265 hsa-miR-765 1 0 0
chr9:33472028|33472265 hsa-miR-3125 1 0 0
chr9:33472028|33472265 hsa-miR-3132 1 0 0
chr9:33472028|33472265 hsa-miR-544b 0 1 0
chr9:33472028|33472265 hsa-miR-3137 1 0 0
chr9:33472028|33472265 hsa-miR-3185 1 1 0
chr9:33472028|33472265 hsa-miR-4298 1 0 0
chr9:33472028|33472265 hsa-miR-3649 1 0 0
chr9:33472028|33472265 hsa-miR-3661 1 0 0
chr9:33472028|33472265 hsa-miR-3916 1 1 0
chr9:33472028|33472265 hsa-miR-3929 0 1 0
chr9:33472028|33472265 hsa-miR-4516 0 1 0
chr9:33472028|33472265 hsa-miR-4654 1 0 0
chr9:33472028|33472265 hsa-miR-4658 1 0 0
chr9:33472028|33472265 hsa-miR-4741 1 0 0
chr9:33472028|33472265 hsa-miR-4765 1 0 0
chr9:33472028|33472265 hsa-miR-4784 1 0 0
chr9:33472028|33472265 hsa-miR-5093 1 0 0
chr9:33472028|33472265 hsa-miR-8052 1 0 0
chr9:33472028|33472265 hsa-miR-8075 0 1 0
chr9:33472028|33472265 hsa-miR-8089 1 0 0
chr9:33472028|33472265 hsa-miR-12115 1 0 0
chr9:33472028|33472265 hsa-miR-12119 1 0 0
chr9:33472028|33472265 hsa-miR-12126 1 0 0
chr9:33472028|33472265 hsa-miR-128-1-5p 1 0 0
chr9:33472028|33472265 hsa-miR-210-3p 1 0 0
chr9:33472028|33472265 hsa-miR-4687-3p 1 0 0
chr9:33472028|33472265 hsa-miR-6799-5p 1 0 0
chr9:33472028|33472265 hsa-miR-7851-3p 1 1 0
chr9:33472028|33472265 hsa-miR-3934-5p 1 0 0
chr9:33472028|33472265 hsa-miR-1227-5p 1 0 0
chr9:33472028|33472265 hsa-miR-3192-5p 1 0 0
chr9:33472028|33472265 hsa-miR-7847-3p 1 0 0
chr9:33472028|33472265 hsa-miR-6746-5p 0 1 0
chr9:33472028|33472265 hsa-miR-4653-3p 1 0 0
chr9:33472028|33472265 hsa-miR-7154-3p 1 0 0
chr9:33472028|33472265 hsa-miR-4474-3p 1 0 0
chr9:33472028|33472265 hsa-miR-23b-5p 1 0 0
chr9:33472028|33472265 hsa-miR-197-5p 1 0 0
chr9:33472028|33472265 hsa-miR-27b-5p 0 1 0
chr9:33472028|33472265 hsa-miR-23a-5p 1 0 0
chr9:33472028|33472265 hsa-miR-5008-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6740-3p 0 1 0
chr9:33472028|33472265 hsa-miR-6852-5p 1 1 0
chr9:33472028|33472265 hsa-miR-7161-3p 0 1 0
chr9:33472028|33472265 hsa-miR-4756-3p 1 0 0
chr9:33472028|33472265 hsa-miR-149-3p 1 0 0
chr9:33472028|33472265 hsa-miR-6830-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6824-5p 1 0 0
chr9:33472028|33472265 hsa-miR-3162-5p 1 0 0
chr9:33472028|33472265 hsa-miR-7156-3p 1 0 0
chr9:33472028|33472265 hsa-miR-4740-5p 1 0 0
chr9:33472028|33472265 hsa-miR-423-5p 1 0 0
chr9:33472028|33472265 hsa-miR-7846-3p 1 0 0
chr9:33472028|33472265 hsa-miR-873-3p 0 1 0
chr9:33472028|33472265 hsa-miR-4649-3p 1 0 0
chr9:33472028|33472265 hsa-miR-6857-3p 0 1 0
chr9:33472028|33472265 hsa-miR-412-5p 1 0 0
chr9:33472028|33472265 hsa-miR-1273h-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6726-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6752-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6803-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6851-5p 1 1 0
chr9:33472028|33472265 hsa-miR-11181-3p 1 0 0
chr9:33472028|33472265 hsa-miR-6751-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6780a-5p 1 0 0
chr9:33472028|33472265 hsa-miR-4632-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6777-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6794-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6846-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6889-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6831-5p 1 1 0
chr9:33472028|33472265 hsa-miR-939-5p 1 0 0
chr9:33472028|33472265 hsa-miR-4758-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6511b-5p 1 0 0
chr9:33472028|33472265 hsa-miR-30c-1-3p 1 0 0
chr9:33472028|33472265 hsa-miR-6758-5p 1 1 0
chr9:33472028|33472265 hsa-miR-1271-3p 1 0 0
chr9:33472028|33472265 hsa-miR-4646-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6791-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6753-3p 1 0 0
chr9:33472028|33472265 hsa-miR-3529-5p 0 1 0
chr9:33472028|33472265 hsa-miR-6775-3p 1 0 0
chr9:33472028|33472265 hsa-miR-4756-5p 1 0 0
chr9:33472028|33472265 hsa-miR-6884-5p 0 1 0
chr9:33472028|33472265 hsa-miR-6766-3p 0 1 0
chr9:33472028|33472265 hsa-miR-4509 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:33472028|33472265
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MTSRRKASIRSFFFSDSLTSFSSSSTCKRG
Nucleotide Sequence TTGACCTCCCGTAGGAAGGCATCAATCCGATCCTTCTTCTTCTCTGACAGCCTTACTTCCTTTAGTAGCTCCTCTACCTGTAAGAGAGGGTAG
CircID chr9:33472028|33472265
ORF Type ORF2
Protein Length 59
Nucleotide Length 177
Protein Sequence MTALLPLVAPLPVREGRRQSISLRVPGTHLEQKLQTLNSTCKRSKLEWNKISVSRRRLS
Nucleotide Sequence CTGACAGCCTTACTTCCTTTAGTAGCTCCTCTACCTGTAAGAGAGGGTAGAAGACAGTCCATCAGCCTCAGGGTCCCAGGTACACACCTCGAACAAAAGCTGCAGACACTCAACAGTACCTGTAAACGAAGCAAGCTGGAGTGGAACAAGATCTCAGTCTCCCGAAGGCGATTAAGC
CircID chr9:33472028|33472265
ORF Type ORF3
Protein Length 56
Nucleotide Length 171
Protein Sequence MFHSSLLRLQVLLSVCSFCSRCVPGTLRLMDCLLPSLTGRGATKGSKAVREEEGSD
Nucleotide Sequence TTGTTCCACTCCAGCTTGCTTCGTTTACAGGTACTGTTGAGTGTCTGCAGCTTTTGTTCGAGGTGTGTACCTGGGACCCTGAGGCTGATGGACTGTCTTCTACCCTCTCTTACAGGTAGAGGAGCTACTAAAGGAAGTAAGGCTGTCAGAGAAGAAGAAGGATCGGATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab