CircRNA Information

General Information
circRNA Basic Information
CircID chr9:33917181|33917342
Strand +
CircType exon
Host Gene ENSG00000107341.4;
Algorism CIRI2;
Sequence CCGCTGTGAATAGGTTTTTGCTGAGGGGCCATGGCCAGGTCCCCACTTGCTCCCCTCCCTTTGGCCTGAGATGGCAGGGCAGTACAGGGGCACTGAAGGAGCACGTCACGACTCCTCATTCCCAGAATCATCATCATCATAACAGTCGGCATCTTCCTCCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:33917181|33917342 hsa-miR-27a-5p 0 0 1
chr9:33917181|33917342 hsa-miR-27a-3p 0 0 1
chr9:33917181|33917342 hsa-miR-148a-5p 0 0 1
chr9:33917181|33917342 hsa-miR-148a-3p 0 0 1
chr9:33917181|33917342 hsa-miR-205-5p 0 0 1
chr9:33917181|33917342 hsa-miR-205-3p 0 0 1
chr9:33917181|33917342 hsa-miR-27b-5p 0 0 1
chr9:33917181|33917342 hsa-miR-27b-3p 0 0 1
chr9:33917181|33917342 hsa-miR-152-5p 0 0 1
chr9:33917181|33917342 hsa-miR-152-3p 0 0 1
chr9:33917181|33917342 hsa-miR-148b-5p 0 0 1
chr9:33917181|33917342 hsa-miR-148b-3p 0 0 1
chr9:33917181|33917342 hsa-miR-492 0 0 1
chr9:33917181|33917342 hsa-miR-545-5p 0 0 1
chr9:33917181|33917342 hsa-miR-545-3p 0 0 1
chr9:33917181|33917342 hsa-miR-631 1 1 1
chr9:33917181|33917342 hsa-miR-874-5p 0 0 1
chr9:33917181|33917342 hsa-miR-874-3p 0 0 1
chr9:33917181|33917342 hsa-miR-939-5p 0 0 1
chr9:33917181|33917342 hsa-miR-939-3p 0 0 1
chr9:33917181|33917342 hsa-miR-1266-5p 0 0 1
chr9:33917181|33917342 hsa-miR-1266-3p 0 0 1
chr9:33917181|33917342 hsa-miR-1272 1 1 1
chr9:33917181|33917342 hsa-miR-548p 0 0 1
chr9:33917181|33917342 hsa-miR-1321 0 0 1
chr9:33917181|33917342 hsa-miR-1322 0 0 1
chr9:33917181|33917342 hsa-miR-486-5p 0 1 1
chr9:33917181|33917342 hsa-miR-491-5p 0 1 1
chr9:33917181|33917342 hsa-miR-146b-3p 0 0 1
chr9:33917181|33917342 hsa-miR-513a-5p 0 0 1
chr9:33917181|33917342 hsa-miR-548d-3p 0 0 1
chr9:33917181|33917342 hsa-miR-658 1 0 0
chr9:33917181|33917342 hsa-miR-760 1 0 0
chr9:33917181|33917342 hsa-miR-2861 1 0 0
chr9:33917181|33917342 hsa-miR-4314 0 1 0
chr9:33917181|33917342 hsa-miR-3916 1 0 0
chr9:33917181|33917342 hsa-miR-4502 1 1 0
chr9:33917181|33917342 hsa-miR-4647 1 0 0
chr9:33917181|33917342 hsa-miR-4689 0 1 0
chr9:33917181|33917342 hsa-miR-4706 1 0 0
chr9:33917181|33917342 hsa-miR-4739 1 1 0
chr9:33917181|33917342 hsa-miR-6081 1 0 0
chr9:33917181|33917342 hsa-miR-6090 1 0 0
chr9:33917181|33917342 hsa-miR-8089 1 0 0
chr9:33917181|33917342 hsa-miR-9718 1 0 0
chr9:33917181|33917342 hsa-miR-215-3p 0 1 0
chr9:33917181|33917342 hsa-miR-7106-5p 1 0 0
chr9:33917181|33917342 hsa-miR-6857-5p 1 1 0
chr9:33917181|33917342 hsa-miR-1972 1 1 0
chr9:33917181|33917342 hsa-miR-766-5p 1 1 0
chr9:33917181|33917342 hsa-miR-3926 0 1 0
chr9:33917181|33917342 hsa-miR-5187-5p 0 1 0
chr9:33917181|33917342 hsa-miR-1225-3p 1 0 0
chr9:33917181|33917342 hsa-miR-4753-5p 0 1 0
chr9:33917181|33917342 hsa-miR-3187-3p 0 1 0
chr9:33917181|33917342 hsa-miR-433-3p 1 0 0
chr9:33917181|33917342 hsa-miR-6716-5p 1 1 0
chr9:33917181|33917342 hsa-miR-6772-3p 0 1 0
chr9:33917181|33917342 hsa-miR-425-3p 1 0 0
chr9:33917181|33917342 hsa-miR-1296-3p 0 1 0
chr9:33917181|33917342 hsa-miR-1343-5p 1 0 0
chr9:33917181|33917342 hsa-miR-6726-5p 1 0 0
chr9:33917181|33917342 hsa-miR-6756-5p 1 0 0
chr9:33917181|33917342 hsa-miR-6815-5p 1 0 0
chr9:33917181|33917342 hsa-miR-11181-3p 1 0 0
chr9:33917181|33917342 hsa-miR-6779-5p 1 0 0
chr9:33917181|33917342 hsa-miR-4728-5p 1 1 0
chr9:33917181|33917342 hsa-miR-328-5p 1 1 0
chr9:33917181|33917342 hsa-miR-4749-5p 1 0 0
chr9:33917181|33917342 hsa-miR-6794-5p 1 0 0
chr9:33917181|33917342 hsa-miR-6858-5p 1 0 0
chr9:33917181|33917342 hsa-miR-4700-5p 1 1 0
chr9:33917181|33917342 hsa-miR-4646-5p 1 1 0
chr9:33917181|33917342 hsa-miR-6727-3p 0 1 0
chr9:33917181|33917342 hsa-miR-6801-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:33917181|33917342
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MLPSLWPEMAGQYRGTEGARHDSSFPESSSS
Nucleotide Sequence TTGCTCCCCTCCCTTTGGCCTGAGATGGCAGGGCAGTACAGGGGCACTGAAGGAGCACGTCACGACTCCTCATTCCCAGAATCATCATCATCATAA
CircID chr9:33917181|33917342
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MLRGHGQVPTCSPPFGLRWQGSTGALKEHVTTPHSQNHHHHNSRHLPP
Nucleotide Sequence TTGCTGAGGGGCCATGGCCAGGTCCCCACTTGCTCCCCTCCCTTTGGCCTGAGATGGCAGGGCAGTACAGGGGCACTGAAGGAGCACGTCACGACTCCTCATTCCCAGAATCATCATCATCATAACAGTCGGCATCTTCCTCCT
CircID chr9:33917181|33917342
ORF Type ORF3
Protein Length 29
Nucleotide Length 87
Protein Sequence MYCPAISGQREGSKWGPGHGPSAKTYSQR
Nucleotide Sequence CTGTACTGCCCTGCCATCTCAGGCCAAAGGGAGGGGAGCAAGTGGGGACCTGGCCATGGCCCCTCAGCAAAAACCTATTCACAGCGG
CircID chr9:33917181|33917342
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MPTVMMMMILGMRSRDVLLQCPCTALPSQAKGRGASGDLAMAPQQKPIHS
Nucleotide Sequence ATGCCGACTGTTATGATGATGATGATTCTGGGAATGAGGAGTCGTGACGTGCTCCTTCAGTGCCCCTGTACTGCCCTGCCATCTCAGGCCAAAGGGAGGGGAGCAAGTGGGGACCTGGCCATGGCCCCTCAGCAAAAACCTATTCACAGC
CircID chr9:33917181|33917342
ORF Type ORF5
Protein Length 27
Nucleotide Length 81
Protein Sequence MPCHLRPKGGEQVGTWPWPLSKNLFTA
Nucleotide Sequence CTGCCCTGCCATCTCAGGCCAAAGGGAGGGGAGCAAGTGGGGACCTGGCCATGGCCCCTCAGCAAAAACCTATTCACAGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab