CircRNA Information

General Information
circRNA Basic Information
CircID chr9:33917546|33917848
Strand -
CircType exon
Host Gene ENSG00000107341.4;
Algorism CIRI2;
Sequence AGCAAAACACGTTTGGTCTGTTTTTAGATTCTTGAAGAATTCAATAGTCTTTCAAGATGTTTAATGTGTTTAAAGCTGGGAACCTGTTGGGAGTTCACAAGTGCTGCATATACTGGGTAGCAAAAGAAAATGGAAAAAAACCCACAAAACAAACTTTAAAAAAAAAAAAAAACAAATTTGCCAAGGTTTAGCTGCTCATTTACATTAGTGTGTGTGCATTCGTTCAGCCCCATGGTGGTGAATTCTGTTTCTTTCCTTTCCTAAGGCTGGGACATGGTGGGCATCAGGGACTTTGTGCTAAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:33917546|33917848 hsa-miR-107 0 0 1
chr9:33917546|33917848 hsa-miR-197-5p 0 0 1
chr9:33917546|33917848 hsa-miR-197-3p 0 0 1
chr9:33917546|33917848 hsa-miR-182-5p 0 0 1
chr9:33917546|33917848 hsa-miR-182-3p 0 0 1
chr9:33917546|33917848 hsa-miR-150-5p 0 0 1
chr9:33917546|33917848 hsa-miR-150-3p 0 0 1
chr9:33917546|33917848 hsa-miR-488-5p 0 0 1
chr9:33917546|33917848 hsa-miR-488-3p 0 0 1
chr9:33917546|33917848 hsa-miR-561-5p 0 0 1
chr9:33917546|33917848 hsa-miR-561-3p 0 0 1
chr9:33917546|33917848 hsa-miR-587 0 0 1
chr9:33917546|33917848 hsa-miR-603 0 0 1
chr9:33917546|33917848 hsa-miR-629-5p 0 0 1
chr9:33917546|33917848 hsa-miR-629-3p 0 0 1
chr9:33917546|33917848 hsa-miR-646 0 0 1
chr9:33917546|33917848 hsa-miR-125a-5p 0 0 1
chr9:33917546|33917848 hsa-miR-548d-3p 0 0 1
chr9:33917546|33917848 hsa-miR-220b 0 0 1
chr9:33917546|33917848 hsa-miR-125b 0 0 1
chr9:33917546|33917848 hsa-miR-103 0 0 1
chr9:33917546|33917848 hsa-miR-6085 1 0 0
chr9:33917546|33917848 hsa-miR-7-5p 0 1 0
chr9:33917546|33917848 hsa-miR-6809-5p 0 1 0
chr9:33917546|33917848 hsa-miR-1225-3p 1 0 0
chr9:33917546|33917848 hsa-miR-585-5p 0 1 0
chr9:33917546|33917848 hsa-miR-7106-3p 1 0 0
chr9:33917546|33917848 hsa-miR-1252-5p 0 1 0
chr9:33917546|33917848 hsa-miR-5001-5p 1 0 0
chr9:33917546|33917848 hsa-miR-6739-5p 0 1 0
chr9:33917546|33917848 hsa-miR-6876-5p 0 1 0
chr9:33917546|33917848 hsa-miR-6791-5p 1 0 0
chr9:33917546|33917848 hsa-miR-3130-5p 0 1 0
chr9:33917546|33917848 hsa-miR-6834-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:33917546|33917848
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MPRFSCSFTLVCVHSFSPMVVNSVSFLS
Nucleotide Sequence TTGCCAAGGTTTAGCTGCTCATTTACATTAGTGTGTGTGCATTCGTTCAGCCCCATGGTGGTGAATTCTGTTTCTTTCCTTTCCTAA
CircID chr9:33917546|33917848
ORF Type ORF2
Protein Length 34
Nucleotide Length 105
Protein Sequence MHILGSKRKWKKTHKTNFKKKKKQICQGLAAHLH
Nucleotide Sequence CTGCATATACTGGGTAGCAAAAGAAAATGGAAAAAAACCCACAAAACAAACTTTAAAAAAAAAAAAAAACAAATTTGCCAAGGTTTAGCTGCTCATTTACATTAG
CircID chr9:33917546|33917848
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MFNVFKAGNLLGVHKCCIYWVAKENGKKPTKQTLKKKKNKFAKV
Nucleotide Sequence ATGTTTAATGTGTTTAAAGCTGGGAACCTGTTGGGAGTTCACAAGTGCTGCATATACTGGGTAGCAAAAGAAAATGGAAAAAAACCCACAAAACAAACTTTAAAAAAAAAAAAAAACAAATTTGCCAAGGTTTAG
CircID chr9:33917546|33917848
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MLIYISVCAFVQPHGGEFCFFPFLRLGHGGHQGLCAK
Nucleotide Sequence CTGCTCATTTACATTAGTGTGTGTGCATTCGTTCAGCCCCATGGTGGTGAATTCTGTTTCTTTCCTTTCCTAAGGCTGGGACATGGTGGGCATCAGGGACTTTGTGCTAAG
CircID chr9:33917546|33917848
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MWVFFHFLLLPSICSTCELPTGSQL
Nucleotide Sequence TTGTGGGTTTTTTTCCATTTTCTTTTGCTACCCAGTATATGCAGCACTTGTGAACTCCCAACAGGTTCCCAGCTTTAA
CircID chr9:33917546|33917848
ORF Type ORF6
Protein Length 25
Nucleotide Length 78
Protein Sequence MGLNECTHTNVNEQLNLGKFVFFFF
Nucleotide Sequence ATGGGGCTGAACGAATGCACACACACTAATGTAAATGAGCAGCTAAACCTTGGCAAATTTGTTTTTTTTTTTTTTTAA
CircID chr9:33917546|33917848
ORF Type ORF7
Protein Length 42
Nucleotide Length 129
Protein Sequence MFCGFFSIFFCYPVYAALVNSQQVPSFKHIKHLERLLNSSRI
Nucleotide Sequence TTGTTTTGTGGGTTTTTTTCCATTTTCTTTTGCTACCCAGTATATGCAGCACTTGTGAACTCCCAACAGGTTCCCAGCTTTAAACACATTAAACATCTTGAAAGACTATTGAATTCTTCAAGAATCTAA
CircID chr9:33917546|33917848
ORF Type ORF8
Protein Length 29
Nucleotide Length 90
Protein Sequence MANLFFFFFKVCFVGFFPFSFATQYMQHL
Nucleotide Sequence TTGGCAAATTTGTTTTTTTTTTTTTTTAAAGTTTGTTTTGTGGGTTTTTTTCCATTTTCTTTTGCTACCCAGTATATGCAGCACTTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab