CircRNA Information

General Information
circRNA Basic Information
CircID chr9:33960826|33963791
Strand -
CircType exon
Host Gene ENSG00000137073.20;
Algorism find_circ;CIRI2;DCC;
Sequence AACTGGCATCAAATACTCACAACATAGCTCAGGATCTGTCAAACAAAAGTTCTTATGGACTCAAAGGGGCTTGGAAGAATTCTGTGGAAGAGTGGACAACAGAAGACTGGACTGAAGAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:33960826|33963791 hsa-miR-422a 0 1 1
chr9:33960826|33963791 hsa-miR-888-5p 0 0 1
chr9:33960826|33963791 hsa-miR-888-3p 0 0 1
chr9:33960826|33963791 hsa-miR-1288-5p 0 0 1
chr9:33960826|33963791 hsa-miR-1288-3p 0 0 1
chr9:33960826|33963791 hsa-miR-7 0 0 1
chr9:33960826|33963791 hsa-miR-378 0 0 1
chr9:33960826|33963791 hsa-miR-1269 0 0 1
chr9:33960826|33963791 hsa-miR-760 1 0 0
chr9:33960826|33963791 hsa-miR-922 0 1 0
chr9:33960826|33963791 hsa-miR-1182 1 0 0
chr9:33960826|33963791 hsa-miR-1268a 1 0 0
chr9:33960826|33963791 hsa-miR-2861 1 0 0
chr9:33960826|33963791 hsa-miR-3138 0 1 0
chr9:33960826|33963791 hsa-miR-3154 1 0 0
chr9:33960826|33963791 hsa-miR-378c 0 1 0
chr9:33960826|33963791 hsa-miR-3936 1 0 0
chr9:33960826|33963791 hsa-miR-1268b 1 0 0
chr9:33960826|33963791 hsa-miR-4437 1 0 0
chr9:33960826|33963791 hsa-miR-4463 0 1 0
chr9:33960826|33963791 hsa-miR-4476 1 0 0
chr9:33960826|33963791 hsa-miR-4489 1 0 0
chr9:33960826|33963791 hsa-miR-4538 1 0 0
chr9:33960826|33963791 hsa-miR-4688 1 0 0
chr9:33960826|33963791 hsa-miR-5192 1 1 0
chr9:33960826|33963791 hsa-miR-6077 0 1 0
chr9:33960826|33963791 hsa-miR-6085 1 1 0
chr9:33960826|33963791 hsa-miR-7705 0 1 0
chr9:33960826|33963791 hsa-miR-12119 1 0 0
chr9:33960826|33963791 hsa-miR-6747-5p 1 0 0
chr9:33960826|33963791 hsa-miR-6854-5p 0 1 0
chr9:33960826|33963791 hsa-miR-8071 1 0 0
chr9:33960826|33963791 hsa-miR-6833-5p 1 1 0
chr9:33960826|33963791 hsa-miR-6880-5p 1 0 0
chr9:33960826|33963791 hsa-miR-7847-3p 1 0 0
chr9:33960826|33963791 hsa-miR-4653-3p 1 0 0
chr9:33960826|33963791 hsa-miR-185-3p 1 0 0
chr9:33960826|33963791 hsa-miR-3190-3p 1 1 0
chr9:33960826|33963791 hsa-miR-6805-5p 1 0 0
chr9:33960826|33963791 hsa-miR-1224-5p 1 0 0
chr9:33960826|33963791 hsa-miR-6760-5p 1 0 0
chr9:33960826|33963791 hsa-miR-5088-5p 1 0 0
chr9:33960826|33963791 hsa-miR-193b-5p 1 0 0
chr9:33960826|33963791 hsa-miR-423-5p 1 0 0
chr9:33960826|33963791 hsa-miR-744-5p 1 0 0
chr9:33960826|33963791 hsa-miR-3664-3p 0 1 0
chr9:33960826|33963791 hsa-miR-3675-5p 1 0 0
chr9:33960826|33963791 hsa-miR-4778-5p 0 1 0
chr9:33960826|33963791 hsa-miR-5003-5p 0 1 0
chr9:33960826|33963791 hsa-miR-6778-5p 1 0 0
chr9:33960826|33963791 hsa-miR-6743-5p 1 0 0
chr9:33960826|33963791 hsa-miR-6813-5p 1 0 0
chr9:33960826|33963791 hsa-miR-6788-5p 1 0 0
chr9:33960826|33963791 hsa-miR-10396a-5p 1 0 0
chr9:33960826|33963791 hsa-miR-10526-3p 1 0 0
chr9:33960826|33963791 hsa-miR-6846-5p 1 0 0
chr9:33960826|33963791 hsa-miR-6848-5p 1 0 0
chr9:33960826|33963791 hsa-miR-1266-5p 1 1 0
chr9:33960826|33963791 hsa-miR-6855-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:33960826|33963791
ORF Type ORF1
Protein Length 39
Nucleotide Length 117
Protein Sequence LASNTHNIAQDLSNKSSYGLKGAWKNSVEEWTTEDWTED
Nucleotide Sequence CTGGCATCAAATACTCACAACATAGCTCAGGATCTGTCAAACAAAAGTTCTTATGGACTCAAAGGGGCTTGGAAGAATTCTGTGGAAGAGTGGACAACAGAAGACTGGACTGAAGAT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr9:33960826|33963791 NOP56 2 1 0
chr9:33960826|33963791 MOV10 0 0 1
chr9:33960826|33963791 ELAVL1 7 6 1
chr9:33960826|33963791 SF3B4 1 0 0
chr9:33960826|33963791 AARS 0 1 0
chr9:33960826|33963791 FMR1 0 0 1
chr9:33960826|33963791 DDX54 0 1 4
chr9:33960826|33963791 CPSF7 1 0 2
chr9:33960826|33963791 CPSF6 0 0 1
chr9:33960826|33963791 SRSF1 2 2 6
chr9:33960826|33963791 NOP58 2 3 4
chr9:33960826|33963791 U2AF1 3 0 1
chr9:33960826|33963791 U2AF2 19 13 10
chr9:33960826|33963791 SRSF9 0 0 1
chr9:33960826|33963791 ZNF622 0 1 2
chr9:33960826|33963791 EFTUD2 0 0 1
chr9:33960826|33963791 RBM10 2 0 0
chr9:33960826|33963791 HNRNPL 1 0 0
chr9:33960826|33963791 HNRNPA2B1 1 0 0
chr9:33960826|33963791 PTBP1 3 0 0
chr9:33960826|33963791 HNRNPC 52 41 4
chr9:33960826|33963791 TRA2A 0 3 2
chr9:33960826|33963791 ZNF184 0 0 1
chr9:33960826|33963791 DDX3X 1 0 0
chr9:33960826|33963791 LARP7 0 0 1
chr9:33960826|33963791 MSI2 0 0 1
chr9:33960826|33963791 HNRNPA1 5 7 0
chr9:33960826|33963791 RANGAP1 1 0 0
chr9:33960826|33963791 LIN28B 1 0 0
chr9:33960826|33963791 IGF2BP1 0 0 6
chr9:33960826|33963791 IGF2BP3 0 0 2
chr9:33960826|33963791 IGF2BP2 4 3 13
chr9:33960826|33963791 TARDBP 5 1 0
chr9:33960826|33963791 YTHDC1 2 0 0
chr9:33960826|33963791 BUD13 0 1 1
chr9:33960826|33963791 DDX24 0 0 2
chr9:33960826|33963791 RBM47 1 0 0
chr9:33960826|33963791 CSTF2T 0 1 1
chr9:33960826|33963791 SRRM4 1 0 0
chr9:33960826|33963791 CSTF2 3 1 0
chr9:33960826|33963791 DKC1 1 0 0
chr9:33960826|33963791 PPIG 0 0 2
chr9:33960826|33963791 FBL 1 1 3
chr9:33960826|33963791 EIF4A3 5 6 5
chr9:33960826|33963791 SRSF10 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab