CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35056960|35057128
Strand +
CircType exon
Host Gene ENSG00000165280.14;
Algorism CIRI2;
Sequence CTGTATGGCTAAGTGGTGGTGGCCAGCGTGCAGTGAGCTGGCCTGCCTGGACCTTGTTCCCTGGGGGTGGGGGCGCTTGCCCAGGAGAGGGACCAGGGGTGCGCCCACAGCCTGCTCCATTCTCCAGTCTGAACAGTTCAGCTACAGTCTGACTCTGGACAGGGGGTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35056960|35057128 hsa-miR-198 0 0 1
chr9:35056960|35057128 hsa-miR-588 0 1 1
chr9:35056960|35057128 hsa-miR-612 0 1 1
chr9:35056960|35057128 hsa-miR-624-5p 0 0 1
chr9:35056960|35057128 hsa-miR-624-3p 0 0 1
chr9:35056960|35057128 hsa-miR-940 0 1 1
chr9:35056960|35057128 hsa-miR-1183 1 1 1
chr9:35056960|35057128 hsa-miR-339-5p 0 0 1
chr9:35056960|35057128 hsa-miR-525-5p 0 0 1
chr9:35056960|35057128 hsa-miR-361-3p 0 0 1
chr9:35056960|35057128 hsa-miR-331-3p 0 1 1
chr9:35056960|35057128 hsa-miR-520a-5p 0 0 1
chr9:35056960|35057128 hsa-miR-220b 0 0 1
chr9:35056960|35057128 hsa-miR-642 0 0 1
chr9:35056960|35057128 hsa-miR-1285 0 0 1
chr9:35056960|35057128 hsa-miR-1208 0 1 0
chr9:35056960|35057128 hsa-miR-3137 1 0 0
chr9:35056960|35057128 hsa-miR-4322 0 1 0
chr9:35056960|35057128 hsa-miR-4265 1 1 0
chr9:35056960|35057128 hsa-miR-3917 1 0 0
chr9:35056960|35057128 hsa-miR-3943 1 0 0
chr9:35056960|35057128 hsa-miR-4463 0 1 0
chr9:35056960|35057128 hsa-miR-4494 1 1 0
chr9:35056960|35057128 hsa-miR-4539 0 1 0
chr9:35056960|35057128 hsa-miR-4673 0 1 0
chr9:35056960|35057128 hsa-miR-4767 1 0 0
chr9:35056960|35057128 hsa-miR-7703 0 1 0
chr9:35056960|35057128 hsa-miR-7974 1 1 0
chr9:35056960|35057128 hsa-miR-8089 1 0 0
chr9:35056960|35057128 hsa-miR-9899 1 0 0
chr9:35056960|35057128 hsa-miR-134-3p 1 1 0
chr9:35056960|35057128 hsa-miR-6894-5p 1 1 0
chr9:35056960|35057128 hsa-miR-1972 0 1 0
chr9:35056960|35057128 hsa-miR-4687-3p 1 0 0
chr9:35056960|35057128 hsa-miR-6720-5p 1 0 0
chr9:35056960|35057128 hsa-miR-1225-3p 1 0 0
chr9:35056960|35057128 hsa-miR-874-5p 1 0 0
chr9:35056960|35057128 hsa-miR-6840-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6721-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6845-3p 0 1 0
chr9:35056960|35057128 hsa-miR-1292-5p 1 1 0
chr9:35056960|35057128 hsa-miR-203b-3p 0 1 0
chr9:35056960|35057128 hsa-miR-1343-3p 1 1 0
chr9:35056960|35057128 hsa-miR-939-3p 0 1 0
chr9:35056960|35057128 hsa-miR-4707-3p 1 0 0
chr9:35056960|35057128 hsa-miR-4690-5p 0 1 0
chr9:35056960|35057128 hsa-miR-4783-5p 1 0 0
chr9:35056960|35057128 hsa-miR-1304-3p 0 1 0
chr9:35056960|35057128 hsa-miR-937-5p 1 0 0
chr9:35056960|35057128 hsa-miR-4640-3p 0 1 0
chr9:35056960|35057128 hsa-miR-7112-5p 0 1 0
chr9:35056960|35057128 hsa-miR-7113-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6795-3p 1 0 0
chr9:35056960|35057128 hsa-miR-1292-3p 0 1 0
chr9:35056960|35057128 hsa-miR-642a-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6800-3p 1 0 0
chr9:35056960|35057128 hsa-miR-499b-5p 1 0 0
chr9:35056960|35057128 hsa-miR-6722-5p 0 1 0
chr9:35056960|35057128 hsa-miR-1915-3p 0 1 0
chr9:35056960|35057128 hsa-miR-10396a-3p 1 0 0
chr9:35056960|35057128 hsa-miR-10396b-3p 1 0 0
chr9:35056960|35057128 hsa-miR-6750-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6791-5p 1 0 0
chr9:35056960|35057128 hsa-miR-6822-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6810-3p 1 0 0
chr9:35056960|35057128 hsa-miR-4701-5p 0 1 0
chr9:35056960|35057128 hsa-miR-6783-3p 0 1 0
chr9:35056960|35057128 hsa-miR-6771-3p 0 1 0
chr9:35056960|35057128 hsa-miR-508-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:35056960|35057128
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MPGPCSLGVGALAQERDQGCAHSLLHSPV
Nucleotide Sequence CTGCCTGGACCTTGTTCCCTGGGGGTGGGGGCGCTTGCCCAGGAGAGGGACCAGGGGTGCGCCCACAGCCTGCTCCATTCTCCAGTCTGA
CircID chr9:35056960|35057128
ORF Type ORF2
Protein Length 55
Nucleotide Length 165
Protein Sequence MAKWWWPACSELACLDLVPWGWGRLPRRGTRGAPTACSILQSEQFSYSLTLDRGF
Nucleotide Sequence ATGGCTAAGTGGTGGTGGCCAGCGTGCAGTGAGCTGGCCTGCCTGGACCTTGTTCCCTGGGGGTGGGGGCGCTTGCCCAGGAGAGGGACCAGGGGTGCGCCCACAGCCTGCTCCATTCTCCAGTCTGAACAGTTCAGCTACAGTCTGACTCTGGACAGGGGGTTT
CircID chr9:35056960|35057128
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MFPGGGGACPGEGPGVRPQPAPFSSLNSSATV
Nucleotide Sequence TTGTTCCCTGGGGGTGGGGGCGCTTGCCCAGGAGAGGGACCAGGGGTGCGCCCACAGCCTGCTCCATTCTCCAGTCTGAACAGTTCAGCTACAGTCTGA
CircID chr9:35056960|35057128
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MFRLENGAGCGRTPGPSPGQAPPPPGNKVQAGQLTARWPPPLSHT
Nucleotide Sequence CTGTTCAGACTGGAGAATGGAGCAGGCTGTGGGCGCACCCCTGGTCCCTCTCCTGGGCAAGCGCCCCCACCCCCAGGGAACAAGGTCCAGGCAGGCCAGCTCACTGCACGCTGGCCACCACCACTTAGCCATACA
CircID chr9:35056960|35057128
ORF Type ORF5
Protein Length 47
Nucleotide Length 141
Protein Sequence MNCSDWRMEQAVGAPLVPLLGKRPHPQGTRSRQASSLHAGHHHLAIQ
Nucleotide Sequence CTGAACTGTTCAGACTGGAGAATGGAGCAGGCTGTGGGCGCACCCCTGGTCCCTCTCCTGGGCAAGCGCCCCCACCCCCAGGGAACAAGGTCCAGGCAGGCCAGCTCACTGCACGCTGGCCACCACCACTTAGCCATACAG
CircID chr9:35056960|35057128
ORF Type ORF6
Protein Length 33
Nucleotide Length 102
Protein Sequence MWAHPWSLSWASAPTPREQGPGRPAHCTLATTT
Nucleotide Sequence CTGTGGGCGCACCCCTGGTCCCTCTCCTGGGCAAGCGCCCCCACCCCCAGGGAACAAGGTCCAGGCAGGCCAGCTCACTGCACGCTGGCCACCACCACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab