CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35057179|35057520
Strand -
CircType exon
Host Gene ENSG00000165280.14;
Algorism CIRI2;
Sequence TGCCCTGACTGGGGCCAGCTCCACCCTGGTTCCCTGAAGGGAATCTGTGTACAAGAGCAAAGCCAAAAAAGAGGGTTAGGACAGGGCCTGTGTAAGATTTCCACAACTACCCCTCTAGCTTCCTTAGGACTCCCATCCCTTTTGGTGTAGGTCCCCAAAGTAACTTAAGCACTGTCTAATGCTCCCAACCAACTTACCTGAAGCTGCCAAAGCCCCGACTCTGCTGAAGGGTCTGGGCAAACATCTCATACTTCCGAATGTCATTGTCACTGACAGAACGGCGCGCAAAGCGCATGGCTTCTTCAAAGTGATCTCGACGGATCTCAGGCACTGGATCATCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35057179|35057520 hsa-miR-96-5p 0 0 1
chr9:35057179|35057520 hsa-miR-96-3p 0 0 1
chr9:35057179|35057520 hsa-miR-182-5p 0 0 1
chr9:35057179|35057520 hsa-miR-182-3p 0 0 1
chr9:35057179|35057520 hsa-miR-204-5p 0 0 1
chr9:35057179|35057520 hsa-miR-204-3p 0 0 1
chr9:35057179|35057520 hsa-miR-211-5p 0 0 1
chr9:35057179|35057520 hsa-miR-211-3p 0 0 1
chr9:35057179|35057520 hsa-miR-214-5p 0 0 1
chr9:35057179|35057520 hsa-miR-214-3p 0 0 1
chr9:35057179|35057520 hsa-miR-223-5p 0 0 1
chr9:35057179|35057520 hsa-miR-223-3p 0 0 1
chr9:35057179|35057520 hsa-miR-143-5p 0 0 1
chr9:35057179|35057520 hsa-miR-143-3p 0 0 1
chr9:35057179|35057520 hsa-miR-382-5p 0 0 1
chr9:35057179|35057520 hsa-miR-382-3p 0 0 1
chr9:35057179|35057520 hsa-miR-519e-5p 0 0 1
chr9:35057179|35057520 hsa-miR-519e-3p 0 0 1
chr9:35057179|35057520 hsa-miR-520f-5p 0 0 1
chr9:35057179|35057520 hsa-miR-520f-3p 0 0 1
chr9:35057179|35057520 hsa-miR-600 0 0 1
chr9:35057179|35057520 hsa-miR-623 0 0 1
chr9:35057179|35057520 hsa-miR-640 0 1 1
chr9:35057179|35057520 hsa-miR-643 0 0 1
chr9:35057179|35057520 hsa-miR-1271-5p 0 0 1
chr9:35057179|35057520 hsa-miR-1271-3p 0 0 1
chr9:35057179|35057520 hsa-miR-920 1 0 1
chr9:35057179|35057520 hsa-miR-922 0 0 1
chr9:35057179|35057520 hsa-miR-1291 0 1 1
chr9:35057179|35057520 hsa-miR-1825 0 0 1
chr9:35057179|35057520 hsa-miR-129-5p 0 0 1
chr9:35057179|35057520 hsa-miR-885-3p 1 0 1
chr9:35057179|35057520 hsa-miR-146b-3p 0 0 1
chr9:35057179|35057520 hsa-miR-199a-5p 0 0 1
chr9:35057179|35057520 hsa-miR-339-5p 0 1 1
chr9:35057179|35057520 hsa-miR-1289 0 1 1
chr9:35057179|35057520 hsa-miR-199b-5p 0 0 1
chr9:35057179|35057520 hsa-miR-515-3p 0 0 1
chr9:35057179|35057520 hsa-miR-550 0 0 1
chr9:35057179|35057520 hsa-miR-1201 0 0 1
chr9:35057179|35057520 hsa-miR-608 1 1 0
chr9:35057179|35057520 hsa-miR-637 1 0 0
chr9:35057179|35057520 hsa-miR-661 1 0 0
chr9:35057179|35057520 hsa-miR-2113 0 1 0
chr9:35057179|35057520 hsa-miR-1202 1 0 0
chr9:35057179|35057520 hsa-miR-3138 1 0 0
chr9:35057179|35057520 hsa-miR-3142 0 1 0
chr9:35057179|35057520 hsa-miR-3147 1 0 0
chr9:35057179|35057520 hsa-miR-3185 0 1 0
chr9:35057179|35057520 hsa-miR-4270 0 1 0
chr9:35057179|35057520 hsa-miR-3938 0 1 0
chr9:35057179|35057520 hsa-miR-4487 0 1 0
chr9:35057179|35057520 hsa-miR-1587 1 0 0
chr9:35057179|35057520 hsa-miR-4651 1 0 0
chr9:35057179|35057520 hsa-miR-4683 1 0 0
chr9:35057179|35057520 hsa-miR-6090 1 0 0
chr9:35057179|35057520 hsa-miR-8089 1 0 0
chr9:35057179|35057520 hsa-miR-12115 1 0 0
chr9:35057179|35057520 hsa-miR-92a-1-5p 1 1 0
chr9:35057179|35057520 hsa-miR-671-5p 1 0 0
chr9:35057179|35057520 hsa-miR-125b-1-3p 1 0 0
chr9:35057179|35057520 hsa-miR-6825-5p 1 0 0
chr9:35057179|35057520 hsa-miR-125a-3p 1 1 0
chr9:35057179|35057520 hsa-miR-10b-3p 0 1 0
chr9:35057179|35057520 hsa-miR-6728-5p 1 1 0
chr9:35057179|35057520 hsa-miR-6757-5p 1 1 0
chr9:35057179|35057520 hsa-miR-4695-5p 1 0 0
chr9:35057179|35057520 hsa-miR-7160-5p 1 0 0
chr9:35057179|35057520 hsa-miR-874-5p 0 1 0
chr9:35057179|35057520 hsa-miR-6727-5p 1 1 0
chr9:35057179|35057520 hsa-miR-197-5p 1 0 0
chr9:35057179|35057520 hsa-miR-8069 1 0 0
chr9:35057179|35057520 hsa-miR-6871-5p 1 1 0
chr9:35057179|35057520 hsa-miR-185-3p 1 0 0
chr9:35057179|35057520 hsa-miR-4697-3p 1 1 0
chr9:35057179|35057520 hsa-miR-3190-3p 1 0 0
chr9:35057179|35057520 hsa-miR-6827-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6782-5p 1 1 0
chr9:35057179|35057520 hsa-miR-6874-5p 1 1 0
chr9:35057179|35057520 hsa-miR-6810-5p 1 1 0
chr9:35057179|35057520 hsa-miR-6786-5p 1 0 0
chr9:35057179|35057520 hsa-miR-7109-5p 1 0 0
chr9:35057179|35057520 hsa-miR-1226-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6753-5p 0 1 0
chr9:35057179|35057520 hsa-miR-296-3p 1 0 0
chr9:35057179|35057520 hsa-miR-3162-5p 1 0 0
chr9:35057179|35057520 hsa-miR-4715-5p 0 1 0
chr9:35057179|35057520 hsa-miR-6828-5p 1 0 0
chr9:35057179|35057520 hsa-miR-887-5p 1 1 0
chr9:35057179|35057520 hsa-miR-34a-5p 1 0 0
chr9:35057179|35057520 hsa-miR-4524a-3p 0 1 0
chr9:35057179|35057520 hsa-miR-6778-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6775-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6726-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6737-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6756-5p 1 1 0
chr9:35057179|35057520 hsa-miR-6803-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6813-5p 0 1 0
chr9:35057179|35057520 hsa-miR-6819-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6842-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6851-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6780a-5p 1 0 0
chr9:35057179|35057520 hsa-miR-4755-5p 0 1 0
chr9:35057179|35057520 hsa-miR-3620-5p 1 0 0
chr9:35057179|35057520 hsa-miR-328-5p 1 0 0
chr9:35057179|35057520 hsa-miR-4685-5p 1 0 0
chr9:35057179|35057520 hsa-miR-4745-5p 1 0 0
chr9:35057179|35057520 hsa-miR-6738-5p 1 1 0
chr9:35057179|35057520 hsa-miR-939-5p 1 0 0
chr9:35057179|35057520 hsa-miR-3198 1 1 0
chr9:35057179|35057520 hsa-miR-3173-3p 1 0 0
chr9:35057179|35057520 hsa-miR-6750-5p 0 1 0
chr9:35057179|35057520 hsa-miR-6766-5p 1 0 0
chr9:35057179|35057520 hsa-miR-550a-3-5p 0 1 0
chr9:35057179|35057520 hsa-miR-550a-5p 1 1 0
chr9:35057179|35057520 hsa-miR-6822-5p 0 1 0
chr9:35057179|35057520 hsa-miR-6775-3p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:35057179|35057520
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MKGICVQEQSQKRGLGQGLCKISTTTPLASLGLPSLLV
Nucleotide Sequence CTGAAGGGAATCTGTGTACAAGAGCAAAGCCAAAAAAGAGGGTTAGGACAGGGCCTGTGTAAGATTTCCACAACTACCCCTCTAGCTTCCTTAGGACTCCCATCCCTTTTGGTGTAG
CircID chr9:35057179|35057520
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MLPTNLPEAAKAPTLLKGLGKHLILPNVIVTDRTARKAHGFFKVISTDLRHWII
Nucleotide Sequence ATGCTCCCAACCAACTTACCTGAAGCTGCCAAAGCCCCGACTCTGCTGAAGGGTCTGGGCAAACATCTCATACTTCCGAATGTCATTGTCACTGACAGAACGGCGCGCAAAGCGCATGGCTTCTTCAAAGTGATCTCGACGGATCTCAGGCACTGGATCATC
CircID chr9:35057179|35057520
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence MGPAPPWFPEGNLCTRAKPKKRVRTGPV
Nucleotide Sequence CTGGGGCCAGCTCCACCCTGGTTCCCTGAAGGGAATCTGTGTACAAGAGCAAAGCCAAAAAAGAGGGTTAGGACAGGGCCTGTGTAA
CircID chr9:35057179|35057520
ORF Type ORF4
Protein Length 71
Nucleotide Length 216
Protein Sequence MIQCLRSVEITLKKPCALRAVLSVTMTFGSMRCLPRPFSRVGALAASGKLVGSIRQCLSYFGDLHQKGWES
Nucleotide Sequence ATGATCCAGTGCCTGAGATCCGTCGAGATCACTTTGAAGAAGCCATGCGCTTTGCGCGCCGTTCTGTCAGTGACAATGACATTCGGAAGTATGAGATGTTTGCCCAGACCCTTCAGCAGAGTCGGGGCTTTGGCAGCTTCAGGTAAGTTGGTTGGGAGCATTAGACAGTGCTTAAGTTACTTTGGGGACCTACACCAAAAGGGATGGGAGTCCTAA
CircID chr9:35057179|35057520
ORF Type ORF5
Protein Length 52
Nucleotide Length 156
Protein Sequence MGTYTKRDGSPKEARGVVVEILHRPCPNPLFWLCSCTQIPFREPGWSWPQSG
Nucleotide Sequence TTGGGGACCTACACCAAAAGGGATGGGAGTCCTAAGGAAGCTAGAGGGGTAGTTGTGGAAATCTTACACAGGCCCTGTCCTAACCCTCTTTTTTGGCTTTGCTCTTGTACACAGATTCCCTTCAGGGAACCAGGGTGGAGCTGGCCCCAGTCAGGG
CircID chr9:35057179|35057520
ORF Type ORF6
Protein Length 33
Nucleotide Length 102
Protein Sequence MRFARRSVSDNDIRKYEMFAQTLQQSRGFGSFR
Nucleotide Sequence ATGCGCTTTGCGCGCCGTTCTGTCAGTGACAATGACATTCGGAAGTATGAGATGTTTGCCCAGACCCTTCAGCAGAGTCGGGGCTTTGGCAGCTTCAGGTAA
CircID chr9:35057179|35057520
ORF Type ORF7
Protein Length 35
Nucleotide Length 105
Protein Sequence MWKSYTGPVLTLFFGFALVHRFPSGNQGGAGPSQG
Nucleotide Sequence TTGTGGAAATCTTACACAGGCCCTGTCCTAACCCTCTTTTTTGGCTTTGCTCTTGTACACAGATTCCCTTCAGGGAACCAGGGTGGAGCTGGCCCCAGTCAGGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab