CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35607643|35608011
Strand +
CircType exon
Host Gene ENSG00000107140.14;
Algorism CIRI2;
Sequence CTCAGTGCGTGGTAGGTAGTCAGGGTCTGCAGGTACTCGGGCGATGAGCTCACAGAGGACAATCCCGAAGGCAAAGACATCAGCCTGGGGGTCAGAGATAATAGTGTCGGGGAAGAATTAACAGTTTTCATTTCAGAATTTTGACAGAATATAGCAGAATTTGGTTGAGGGTGGGGGATCTTGACAGTTTTCATGTGTTAGAAGGGTGCCTGTGAGGGGCAAAGGGATCTTGGGGACTCCTGAAGATCTGGTAGGGTTGTTTTGGGGATGGATGGGGCTTTATGAGAATACCTCAAGGGTCTCGGAAGGCCTTGGGGATCTGAAGGGTTGATGTCTCACCTTCTCATCATACAGCTCACCCCGTAACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35607643|35608011 hsa-let-7b-5p 0 0 1
chr9:35607643|35608011 hsa-let-7b-3p 0 0 1
chr9:35607643|35608011 hsa-let-7c-5p 0 0 1
chr9:35607643|35608011 hsa-let-7c-3p 0 0 1
chr9:35607643|35608011 hsa-let-7d-5p 0 0 1
chr9:35607643|35608011 hsa-let-7d-3p 0 0 1
chr9:35607643|35608011 hsa-let-7e-5p 0 0 1
chr9:35607643|35608011 hsa-let-7e-3p 0 0 1
chr9:35607643|35608011 hsa-miR-98-5p 0 0 1
chr9:35607643|35608011 hsa-miR-98-3p 0 0 1
chr9:35607643|35608011 hsa-miR-204-5p 0 0 1
chr9:35607643|35608011 hsa-miR-204-3p 0 0 1
chr9:35607643|35608011 hsa-miR-211-5p 0 0 1
chr9:35607643|35608011 hsa-miR-211-3p 0 0 1
chr9:35607643|35608011 hsa-let-7g-5p 0 0 1
chr9:35607643|35608011 hsa-let-7g-3p 0 0 1
chr9:35607643|35608011 hsa-let-7i-5p 0 0 1
chr9:35607643|35608011 hsa-let-7i-3p 0 0 1
chr9:35607643|35608011 hsa-miR-511-5p 0 0 1
chr9:35607643|35608011 hsa-miR-511-3p 0 0 1
chr9:35607643|35608011 hsa-miR-202-5p 0 0 1
chr9:35607643|35608011 hsa-miR-202-3p 0 0 1
chr9:35607643|35608011 hsa-miR-504-5p 0 0 1
chr9:35607643|35608011 hsa-miR-504-3p 0 0 1
chr9:35607643|35608011 hsa-miR-558 0 0 1
chr9:35607643|35608011 hsa-miR-569 0 0 1
chr9:35607643|35608011 hsa-miR-570-5p 0 0 1
chr9:35607643|35608011 hsa-miR-570-3p 0 0 1
chr9:35607643|35608011 hsa-miR-630 0 0 1
chr9:35607643|35608011 hsa-miR-548e-5p 0 0 1
chr9:35607643|35608011 hsa-miR-548e-3p 0 0 1
chr9:35607643|35608011 hsa-miR-1253 0 0 1
chr9:35607643|35608011 hsa-miR-548g-5p 0 0 1
chr9:35607643|35608011 hsa-miR-548g-3p 0 0 1
chr9:35607643|35608011 hsa-miR-1272 0 0 1
chr9:35607643|35608011 hsa-miR-1322 0 0 1
chr9:35607643|35608011 hsa-miR-1289 0 1 1
chr9:35607643|35608011 hsa-miR-361-3p 0 1 1
chr9:35607643|35608011 hsa-miR-188-5p 0 0 1
chr9:35607643|35608011 hsa-miR-513a-5p 0 0 1
chr9:35607643|35608011 hsa-miR-548a-3p 0 0 1
chr9:35607643|35608011 hsa-miR-521 0 0 1
chr9:35607643|35608011 hsa-miR-220c 0 0 1
chr9:35607643|35608011 hsa-miR-548f 0 0 1
chr9:35607643|35608011 hsa-let-7a 0 0 1
chr9:35607643|35608011 hsa-let-7f 0 0 1
chr9:35607643|35608011 hsa-miR-1300 0 0 1
chr9:35607643|35608011 hsa-miR-203 0 0 1
chr9:35607643|35608011 hsa-miR-219-5p 0 0 1
chr9:35607643|35608011 hsa-miR-938 1 0 0
chr9:35607643|35608011 hsa-miR-1291 1 1 0
chr9:35607643|35608011 hsa-miR-3142 0 1 0
chr9:35607643|35608011 hsa-miR-3166 1 0 0
chr9:35607643|35608011 hsa-miR-4322 1 1 0
chr9:35607643|35608011 hsa-miR-4323 1 1 0
chr9:35607643|35608011 hsa-miR-3909 1 0 0
chr9:35607643|35608011 hsa-miR-3929 0 1 0
chr9:35607643|35608011 hsa-miR-3943 1 0 0
chr9:35607643|35608011 hsa-miR-5100 0 1 0
chr9:35607643|35608011 hsa-miR-5705 1 0 0
chr9:35607643|35608011 hsa-miR-8075 0 1 0
chr9:35607643|35608011 hsa-miR-6749-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4747-3p 1 0 0
chr9:35607643|35608011 hsa-miR-1273h-3p 1 1 0
chr9:35607643|35608011 hsa-miR-1225-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6875-3p 1 0 0
chr9:35607643|35608011 hsa-miR-3189-5p 1 1 0
chr9:35607643|35608011 hsa-miR-6817-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4725-5p 1 1 0
chr9:35607643|35608011 hsa-miR-5008-5p 0 1 0
chr9:35607643|35608011 hsa-miR-7109-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6772-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6763-3p 1 0 0
chr9:35607643|35608011 hsa-miR-1247-5p 1 0 0
chr9:35607643|35608011 hsa-miR-4707-3p 1 0 0
chr9:35607643|35608011 hsa-miR-7161-3p 0 1 0
chr9:35607643|35608011 hsa-miR-361-5p 0 1 0
chr9:35607643|35608011 hsa-miR-5196-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6786-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6769a-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4646-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4707-5p 1 0 0
chr9:35607643|35608011 hsa-miR-1236-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6730-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4758-3p 1 0 0
chr9:35607643|35608011 hsa-miR-1914-5p 1 0 0
chr9:35607643|35608011 hsa-miR-5088-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4749-3p 1 0 0
chr9:35607643|35608011 hsa-miR-328-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6795-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6859-3p 1 1 0
chr9:35607643|35608011 hsa-miR-3620-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6734-3p 0 1 0
chr9:35607643|35608011 hsa-miR-1249-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6729-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6789-3p 1 0 0
chr9:35607643|35608011 hsa-miR-4714-5p 1 1 0
chr9:35607643|35608011 hsa-miR-3913-3p 0 1 0
chr9:35607643|35608011 hsa-miR-6812-5p 0 1 0
chr9:35607643|35608011 hsa-miR-6852-3p 0 1 0
chr9:35607643|35608011 hsa-miR-6866-3p 0 1 0
chr9:35607643|35608011 hsa-miR-6799-3p 1 0 0
chr9:35607643|35608011 hsa-miR-1271-3p 1 0 0
chr9:35607643|35608011 hsa-miR-6756-3p 1 0 0
chr9:35607643|35608011 hsa-miR-3059-5p 1 0 0
chr9:35607643|35608011 hsa-miR-6891-3p 1 0 0
chr9:35607643|35608011 hsa-miR-10394-5p 1 1 0
chr9:35607643|35608011 hsa-miR-6848-3p 1 0 0
chr9:35607643|35608011 hsa-miR-323b-5p 1 1 0
chr9:35607643|35608011 hsa-miR-6811-5p 1 0 0
chr9:35607643|35608011 hsa-miR-509-5p 1 0 0
chr9:35607643|35608011 hsa-miR-506-3p 1 1 0
chr9:35607643|35608011 hsa-miR-6834-3p 1 0 0
chr9:35607643|35608011 hsa-miR-3121-5p 0 1 0
chr9:35607643|35608011 hsa-miR-301a-5p 0 1 0
chr9:35607643|35608011 hsa-miR-1245b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:35607643|35608011
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MSSQRTIPKAKTSAWGSEIIVSGKN
Nucleotide Sequence ATGAGCTCACAGAGGACAATCCCGAAGGCAAAGACATCAGCCTGGGGGTCAGAGATAATAGTGTCGGGGAAGAATTAA
CircID chr9:35607643|35608011
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MGTPEDLVGLFWGWMGLYENTSRVSEGLGDLKG
Nucleotide Sequence TTGGGGACTCCTGAAGATCTGGTAGGGTTGTTTTGGGGATGGATGGGGCTTTATGAGAATACCTCAAGGGTCTCGGAAGGCCTTGGGGATCTGAAGGGTTGA
CircID chr9:35607643|35608011
ORF Type ORF3
Protein Length 29
Nucleotide Length 90
Protein Sequence MPLTGTLLTHENCQDPPPSTKFCYILSKF
Nucleotide Sequence TTGCCCCTCACAGGCACCCTTCTAACACATGAAAACTGTCAAGATCCCCCACCCTCAACCAAATTCTGCTATATTCTGTCAAAATTCTGA
CircID chr9:35607643|35608011
ORF Type ORF4
Protein Length 32
Nucleotide Length 99
Protein Sequence MRYSHKAPSIPKTTLPDLQESPRSLCPSQAPF
Nucleotide Sequence TTGAGGTATTCTCATAAAGCCCCATCCATCCCCAAAACAACCCTACCAGATCTTCAGGAGTCCCCAAGATCCCTTTGCCCCTCACAGGCACCCTTCTAA
CircID chr9:35607643|35608011
ORF Type ORF5
Protein Length 64
Nucleotide Length 192
Protein Sequence MKTVKIPHPQPNSAIFCQNSEMKTVNSSPTLLSLTPRLMSLPSGLSSVSSSPEYLQTLTTYHAL
Nucleotide Sequence ATGAAAACTGTCAAGATCCCCCACCCTCAACCAAATTCTGCTATATTCTGTCAAAATTCTGAAATGAAAACTGTTAATTCTTCCCCGACACTATTATCTCTGACCCCCAGGCTGATGTCTTTGCCTTCGGGATTGTCCTCTGTGAGCTCATCGCCCGAGTACCTGCAGACCCTGACTACCTACCACGCACTG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab