CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35698077|35698358
Strand -
CircType exon
Host Gene ENSG00000137076.17;
Algorism CIRI2;
Sequence CACCACTGTCTCATTCTCCTGCTCTTCAAAGGCTGCAGCCTTCTGTGCTGCTTTCACCAGATTATCTGAGGCTCGCTTCACTGCGTTGCCAGCAGCCTGGGCAGAGAGAAAGTGGCCTAGGTTGAGAACTCAGGTACGGTCCCAGTTGAGACAGTACCTCAATTCTCTCATAGAAACATACATCTCGGGAGTGACAGTTTGAAGCAGTATAGCCCAAGGGACAATGGGATGGGTCAGGGTTCTCACCTGAAGTCGTTTCATTGCCTCCGAGTCCTGGTCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35698077|35698358 hsa-let-7b-5p 0 0 1
chr9:35698077|35698358 hsa-let-7b-3p 0 0 1
chr9:35698077|35698358 hsa-let-7c-5p 0 0 1
chr9:35698077|35698358 hsa-let-7c-3p 0 0 1
chr9:35698077|35698358 hsa-let-7d-5p 0 0 1
chr9:35698077|35698358 hsa-let-7d-3p 0 0 1
chr9:35698077|35698358 hsa-let-7e-5p 0 0 1
chr9:35698077|35698358 hsa-let-7e-3p 0 0 1
chr9:35698077|35698358 hsa-miR-15a-5p 0 0 1
chr9:35698077|35698358 hsa-miR-15a-3p 0 0 1
chr9:35698077|35698358 hsa-miR-98-5p 0 0 1
chr9:35698077|35698358 hsa-miR-98-3p 0 0 1
chr9:35698077|35698358 hsa-let-7g-5p 0 0 1
chr9:35698077|35698358 hsa-let-7g-3p 0 0 1
chr9:35698077|35698358 hsa-let-7i-5p 0 0 1
chr9:35698077|35698358 hsa-let-7i-3p 0 0 1
chr9:35698077|35698358 hsa-miR-15b-5p 0 0 1
chr9:35698077|35698358 hsa-miR-15b-3p 0 0 1
chr9:35698077|35698358 hsa-miR-146a-5p 0 0 1
chr9:35698077|35698358 hsa-miR-146a-3p 0 0 1
chr9:35698077|35698358 hsa-miR-195-5p 0 0 1
chr9:35698077|35698358 hsa-miR-195-3p 0 0 1
chr9:35698077|35698358 hsa-miR-424-5p 0 0 1
chr9:35698077|35698358 hsa-miR-424-3p 0 0 1
chr9:35698077|35698358 hsa-miR-202-5p 0 0 1
chr9:35698077|35698358 hsa-miR-202-3p 0 0 1
chr9:35698077|35698358 hsa-miR-497-5p 0 0 1
chr9:35698077|35698358 hsa-miR-497-3p 0 0 1
chr9:35698077|35698358 hsa-miR-567 0 0 1
chr9:35698077|35698358 hsa-miR-589-5p 0 0 1
chr9:35698077|35698358 hsa-miR-589-3p 0 0 1
chr9:35698077|35698358 hsa-miR-623 0 0 1
chr9:35698077|35698358 hsa-miR-635 0 1 1
chr9:35698077|35698358 hsa-miR-650 0 0 1
chr9:35698077|35698358 hsa-miR-668-5p 0 0 1
chr9:35698077|35698358 hsa-miR-668-3p 0 0 1
chr9:35698077|35698358 hsa-miR-297 0 0 1
chr9:35698077|35698358 hsa-miR-548g-5p 0 0 1
chr9:35698077|35698358 hsa-miR-548g-3p 0 0 1
chr9:35698077|35698358 hsa-miR-513c-5p 0 0 1
chr9:35698077|35698358 hsa-miR-513c-3p 0 0 1
chr9:35698077|35698358 hsa-miR-125a-3p 0 1 1
chr9:35698077|35698358 hsa-miR-1184 0 0 1
chr9:35698077|35698358 hsa-miR-324-3p 0 0 1
chr9:35698077|35698358 hsa-miR-483-3p 0 0 1
chr9:35698077|35698358 hsa-miR-146b-5p 0 0 1
chr9:35698077|35698358 hsa-miR-16 0 0 1
chr9:35698077|35698358 hsa-let-7a 0 0 1
chr9:35698077|35698358 hsa-let-7f 0 0 1
chr9:35698077|35698358 hsa-miR-765 1 0 0
chr9:35698077|35698358 hsa-miR-2117 0 1 0
chr9:35698077|35698358 hsa-miR-3137 0 1 0
chr9:35698077|35698358 hsa-miR-3154 1 0 0
chr9:35698077|35698358 hsa-miR-3171 0 1 0
chr9:35698077|35698358 hsa-miR-3197 1 0 0
chr9:35698077|35698358 hsa-miR-3652 1 0 0
chr9:35698077|35698358 hsa-miR-4430 1 0 0
chr9:35698077|35698358 hsa-miR-4468 1 0 0
chr9:35698077|35698358 hsa-miR-4682 0 1 0
chr9:35698077|35698358 hsa-miR-4689 1 0 0
chr9:35698077|35698358 hsa-miR-5704 0 1 0
chr9:35698077|35698358 hsa-miR-6165 1 1 0
chr9:35698077|35698358 hsa-miR-504-3p 1 0 0
chr9:35698077|35698358 hsa-miR-512-5p 1 0 0
chr9:35698077|35698358 hsa-miR-6765-5p 1 0 0
chr9:35698077|35698358 hsa-miR-212-5p 1 0 0
chr9:35698077|35698358 hsa-miR-7106-5p 1 0 0
chr9:35698077|35698358 hsa-miR-486-5p 1 0 0
chr9:35698077|35698358 hsa-miR-6510-5p 1 1 0
chr9:35698077|35698358 hsa-miR-3692-5p 0 1 0
chr9:35698077|35698358 hsa-miR-4768-3p 0 1 0
chr9:35698077|35698358 hsa-miR-4709-3p 1 1 0
chr9:35698077|35698358 hsa-miR-4722-5p 1 1 0
chr9:35698077|35698358 hsa-miR-6873-3p 0 1 0
chr9:35698077|35698358 hsa-miR-939-3p 1 0 0
chr9:35698077|35698358 hsa-miR-1247-5p 1 1 0
chr9:35698077|35698358 hsa-miR-885-3p 0 1 0
chr9:35698077|35698358 hsa-miR-4732-5p 1 0 0
chr9:35698077|35698358 hsa-miR-4446-3p 1 0 0
chr9:35698077|35698358 hsa-miR-7156-3p 0 1 0
chr9:35698077|35698358 hsa-miR-7112-5p 1 0 0
chr9:35698077|35698358 hsa-miR-6870-3p 0 1 0
chr9:35698077|35698358 hsa-miR-6813-3p 1 0 0
chr9:35698077|35698358 hsa-miR-4732-3p 0 1 0
chr9:35698077|35698358 hsa-miR-6868-5p 0 1 0
chr9:35698077|35698358 hsa-miR-2114-3p 0 1 0
chr9:35698077|35698358 hsa-miR-6773-3p 0 1 0
chr9:35698077|35698358 hsa-miR-6501-3p 1 0 0
chr9:35698077|35698358 hsa-miR-4750-3p 0 1 0
chr9:35698077|35698358 hsa-miR-6779-3p 0 1 0
chr9:35698077|35698358 hsa-miR-4712-3p 0 1 0
chr9:35698077|35698358 hsa-miR-6732-3p 0 1 0
chr9:35698077|35698358 hsa-miR-4714-5p 0 1 0
chr9:35698077|35698358 hsa-miR-16-5p 0 1 0
chr9:35698077|35698358 hsa-miR-11181-3p 1 0 0
chr9:35698077|35698358 hsa-miR-6722-3p 1 0 0
chr9:35698077|35698358 hsa-miR-6879-5p 1 0 0
chr9:35698077|35698358 hsa-miR-3620-5p 1 0 0
chr9:35698077|35698358 hsa-miR-4632-5p 1 0 0
chr9:35698077|35698358 hsa-miR-4685-5p 0 1 0
chr9:35698077|35698358 hsa-miR-6858-5p 1 0 0
chr9:35698077|35698358 hsa-miR-4436b-3p 1 1 0
chr9:35698077|35698358 hsa-miR-6731-5p 1 0 0
chr9:35698077|35698358 hsa-miR-6758-5p 1 0 0
chr9:35698077|35698358 hsa-miR-6791-5p 1 0 0
chr9:35698077|35698358 hsa-miR-9851-5p 0 1 0
chr9:35698077|35698358 hsa-miR-4768-5p 0 1 0
chr9:35698077|35698358 hsa-miR-4676-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:35698077|35698358
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MKQYSPRDNGMGQGSHLKSFHCLRVLVS
Nucleotide Sequence TTGAAGCAGTATAGCCCAAGGGACAATGGGATGGGTCAGGGTTCTCACCTGAAGTCGTTTCATTGCCTCCGAGTCCTGGTCAGC
CircID chr9:35698077|35698358
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MPAAWAERKWPRLRTQVRSQLRQYLNSLIETYISGVTV
Nucleotide Sequence TTGCCAGCAGCCTGGGCAGAGAGAAAGTGGCCTAGGTTGAGAACTCAGGTACGGTCCCAGTTGAGACAGTACCTCAATTCTCTCATAGAAACATACATCTCGGGAGTGACAGTTTGA
CircID chr9:35698077|35698358
ORF Type ORF3
Protein Length 39
Nucleotide Length 120
Protein Sequence MSHSPALQRLQPSVLLSPDYLRLASLRCQQPGQRESGLG
Nucleotide Sequence CTGTCTCATTCTCCTGCTCTTCAAAGGCTGCAGCCTTCTGTGCTGCTTTCACCAGATTATCTGAGGCTCGCTTCACTGCGTTGCCAGCAGCCTGGGCAGAGAGAAAGTGGCCTAGGTTGA
CircID chr9:35698077|35698358
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MKRLQVRTLTHPIVPWAILLQTVTPEMYVSMRELRYCLNWDRT
Nucleotide Sequence ATGAAACGACTTCAGGTGAGAACCCTGACCCATCCCATTGTCCCTTGGGCTATACTGCTTCAAACTGTCACTCCCGAGATGTATGTTTCTATGAGAGAATTGAGGTACTGTCTCAACTGGGACCGTACCTGA
CircID chr9:35698077|35698358
ORF Type ORF5
Protein Length 51
Nucleotide Length 156
Protein Sequence MGYTASNCHSRDVCFYERIEVLSQLGPYLSSQPRPLSLCPGCWQRSEASLR
Nucleotide Sequence TTGGGCTATACTGCTTCAAACTGTCACTCCCGAGATGTATGTTTCTATGAGAGAATTGAGGTACTGTCTCAACTGGGACCGTACCTGAGTTCTCAACCTAGGCCACTTTCTCTCTGCCCAGGCTGCTGGCAACGCAGTGAAGCGAGCCTCAGATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab