CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35698808|35699060
Strand -
CircType exon
Host Gene ENSG00000137076.17;
Algorism CIRI2;
Sequence CTTCCCTTGGGCCACTAGTTCTCTCTGGGCAGCCGACGCAGCCTTTACCAGTGCACTGGTGGCTGCTGCAATGGACTTGGCAGCTTCTAGTATCTGCTCCTCAAAGTTCAAGGACTCATCTGCCTCCTGCAATAAGCGAAGGTTGCAGAAAGAGATGTAAAGTCAGAGATGAAGGTGGGGACACTGCCATGGTGAGGGTGGAAGAGGAAGGGAGCAGGACTGACCTTGGGTTTGGCCCGGGGCTTCAGCTGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35698808|35699060 hsa-miR-22-5p 0 0 1
chr9:35698808|35699060 hsa-miR-22-3p 0 0 1
chr9:35698808|35699060 hsa-miR-25-5p 0 0 1
chr9:35698808|35699060 hsa-miR-25-3p 0 0 1
chr9:35698808|35699060 hsa-miR-32-5p 0 0 1
chr9:35698808|35699060 hsa-miR-32-3p 0 0 1
chr9:35698808|35699060 hsa-miR-107 0 0 1
chr9:35698808|35699060 hsa-miR-148a-5p 0 0 1
chr9:35698808|35699060 hsa-miR-148a-3p 0 0 1
chr9:35698808|35699060 hsa-miR-34a-5p 0 0 1
chr9:35698808|35699060 hsa-miR-34a-3p 0 0 1
chr9:35698808|35699060 hsa-miR-205-5p 0 0 1
chr9:35698808|35699060 hsa-miR-205-3p 0 0 1
chr9:35698808|35699060 hsa-miR-137-5p 0 0 1
chr9:35698808|35699060 hsa-miR-137-3p 0 0 1
chr9:35698808|35699060 hsa-miR-152-5p 0 0 1
chr9:35698808|35699060 hsa-miR-152-3p 0 0 1
chr9:35698808|35699060 hsa-miR-146a-5p 0 0 1
chr9:35698808|35699060 hsa-miR-146a-3p 0 0 1
chr9:35698808|35699060 hsa-miR-363-5p 0 0 1
chr9:35698808|35699060 hsa-miR-363-3p 0 0 1
chr9:35698808|35699060 hsa-miR-367-5p 0 0 1
chr9:35698808|35699060 hsa-miR-367-3p 0 0 1
chr9:35698808|35699060 hsa-miR-370-5p 0 0 1
chr9:35698808|35699060 hsa-miR-370-3p 0 0 1
chr9:35698808|35699060 hsa-miR-148b-5p 0 0 1
chr9:35698808|35699060 hsa-miR-148b-3p 0 0 1
chr9:35698808|35699060 hsa-miR-345-5p 0 0 1
chr9:35698808|35699060 hsa-miR-345-3p 0 0 1
chr9:35698808|35699060 hsa-miR-449a 0 0 1
chr9:35698808|35699060 hsa-miR-92b-5p 0 0 1
chr9:35698808|35699060 hsa-miR-92b-3p 0 0 1
chr9:35698808|35699060 hsa-miR-604 0 0 1
chr9:35698808|35699060 hsa-miR-646 0 0 1
chr9:35698808|35699060 hsa-miR-650 0 0 1
chr9:35698808|35699060 hsa-miR-449b-5p 0 0 1
chr9:35698808|35699060 hsa-miR-449b-3p 0 0 1
chr9:35698808|35699060 hsa-miR-1301-5p 0 0 1
chr9:35698808|35699060 hsa-miR-1301-3p 0 0 1
chr9:35698808|35699060 hsa-miR-1236-5p 0 0 1
chr9:35698808|35699060 hsa-miR-1236-3p 0 0 1
chr9:35698808|35699060 hsa-miR-663b 0 0 1
chr9:35698808|35699060 hsa-miR-1286 0 0 1
chr9:35698808|35699060 hsa-miR-1304-5p 0 0 1
chr9:35698808|35699060 hsa-miR-1304-3p 0 0 1
chr9:35698808|35699060 hsa-miR-1825 0 0 1
chr9:35698808|35699060 hsa-miR-1827 0 0 1
chr9:35698808|35699060 hsa-miR-28-3p 0 0 1
chr9:35698808|35699060 hsa-miR-1224-5p 0 0 1
chr9:35698808|35699060 hsa-miR-1224-3p 0 1 1
chr9:35698808|35699060 hsa-miR-455-3p 0 0 1
chr9:35698808|35699060 hsa-miR-34c-5p 0 1 1
chr9:35698808|35699060 hsa-miR-146b-5p 0 0 1
chr9:35698808|35699060 hsa-miR-103 0 0 1
chr9:35698808|35699060 hsa-miR-544 0 0 1
chr9:35698808|35699060 hsa-miR-92a 0 0 1
chr9:35698808|35699060 hsa-miR-484 1 0 0
chr9:35698808|35699060 hsa-miR-1913 1 0 0
chr9:35698808|35699060 hsa-miR-718 1 0 0
chr9:35698808|35699060 hsa-miR-3131 1 0 0
chr9:35698808|35699060 hsa-miR-4270 1 0 0
chr9:35698808|35699060 hsa-miR-3935 1 0 0
chr9:35698808|35699060 hsa-miR-4689 1 1 0
chr9:35698808|35699060 hsa-miR-4741 1 0 0
chr9:35698808|35699060 hsa-miR-4784 1 0 0
chr9:35698808|35699060 hsa-miR-6081 1 0 0
chr9:35698808|35699060 hsa-miR-3194-3p 1 0 0
chr9:35698808|35699060 hsa-miR-149-5p 1 0 0
chr9:35698808|35699060 hsa-miR-6881-3p 1 1 0
chr9:35698808|35699060 hsa-miR-129-5p 0 1 0
chr9:35698808|35699060 hsa-miR-4695-5p 1 1 0
chr9:35698808|35699060 hsa-miR-6746-5p 1 0 0
chr9:35698808|35699060 hsa-miR-7160-5p 1 0 0
chr9:35698808|35699060 hsa-miR-877-3p 1 1 0
chr9:35698808|35699060 hsa-miR-4753-3p 0 1 0
chr9:35698808|35699060 hsa-miR-3126-5p 1 0 0
chr9:35698808|35699060 hsa-miR-6728-3p 1 0 0
chr9:35698808|35699060 hsa-miR-3691-3p 0 1 0
chr9:35698808|35699060 hsa-miR-4436b-5p 1 0 0
chr9:35698808|35699060 hsa-miR-939-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6772-3p 1 0 0
chr9:35698808|35699060 hsa-miR-7113-3p 1 0 0
chr9:35698808|35699060 hsa-miR-3667-3p 1 1 0
chr9:35698808|35699060 hsa-miR-6809-3p 0 1 0
chr9:35698808|35699060 hsa-miR-7111-3p 1 0 0
chr9:35698808|35699060 hsa-miR-4667-3p 1 0 0
chr9:35698808|35699060 hsa-miR-3925-5p 0 1 0
chr9:35698808|35699060 hsa-miR-211-5p 1 1 0
chr9:35698808|35699060 hsa-miR-423-5p 1 0 0
chr9:35698808|35699060 hsa-miR-7106-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6828-3p 1 0 0
chr9:35698808|35699060 hsa-miR-1910-5p 1 1 0
chr9:35698808|35699060 hsa-miR-6741-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6814-5p 0 1 0
chr9:35698808|35699060 hsa-miR-1914-5p 1 0 0
chr9:35698808|35699060 hsa-miR-5088-3p 1 1 0
chr9:35698808|35699060 hsa-miR-28-5p 0 1 0
chr9:35698808|35699060 hsa-miR-767-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6734-3p 1 0 0
chr9:35698808|35699060 hsa-miR-1249-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6838-3p 1 1 0
chr9:35698808|35699060 hsa-miR-1343-5p 1 0 0
chr9:35698808|35699060 hsa-miR-6722-3p 1 1 0
chr9:35698808|35699060 hsa-miR-4685-3p 1 1 0
chr9:35698808|35699060 hsa-miR-6858-5p 1 1 0
chr9:35698808|35699060 hsa-miR-939-5p 1 0 0
chr9:35698808|35699060 hsa-miR-365a-5p 1 0 0
chr9:35698808|35699060 hsa-miR-365b-5p 1 0 0
chr9:35698808|35699060 hsa-miR-10396a-3p 0 1 0
chr9:35698808|35699060 hsa-miR-10396b-3p 0 1 0
chr9:35698808|35699060 hsa-miR-6856-5p 1 1 0
chr9:35698808|35699060 hsa-miR-10398-3p 1 0 0
chr9:35698808|35699060 hsa-miR-4667-5p 1 0 0
chr9:35698808|35699060 hsa-miR-10398-5p 1 0 0
chr9:35698808|35699060 hsa-miR-6893-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6756-3p 1 0 0
chr9:35698808|35699060 hsa-miR-3059-5p 1 1 0
chr9:35698808|35699060 hsa-miR-5006-3p 1 0 0
chr9:35698808|35699060 hsa-miR-6874-3p 1 1 0
chr9:35698808|35699060 hsa-miR-301a-5p 0 1 0
chr9:35698808|35699060 hsa-miR-142-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:35698808|35699060
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MVAAAMDLAASSICSSKFKDSSASCNKRRLQKEM
Nucleotide Sequence CTGGTGGCTGCTGCAATGGACTTGGCAGCTTCTAGTATCTGCTCCTCAAAGTTCAAGGACTCATCTGCCTCCTGCAATAAGCGAAGGTTGCAGAAAGAGATGTAA
CircID chr9:35698808|35699060
ORF Type ORF2
Protein Length 63
Nucleotide Length 189
Protein Sequence MLQWTWQLLVSAPQSSRTHLPPAISEGCRKRCKVRDEGGDTAMVRVEEEGSRTDLGFGPGLQL
Nucleotide Sequence CTGCTGCAATGGACTTGGCAGCTTCTAGTATCTGCTCCTCAAAGTTCAAGGACTCATCTGCCTCCTGCAATAAGCGAAGGTTGCAGAAAGAGATGTAAAGTCAGAGATGAAGGTGGGGACACTGCCATGGTGAGGGTGGAAGAGGAAGGGAGCAGGACTGACCTTGGGTTTGGCCCGGGGCTTCAGCTG
CircID chr9:35698808|35699060
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MLPSSSTLTMAVSPPSSLTLHLFLQPSLIAGGR
Nucleotide Sequence CTGCTCCCTTCCTCTTCCACCCTCACCATGGCAGTGTCCCCACCTTCATCTCTGACTTTACATCTCTTTCTGCAACCTTCGCTTATTGCAGGAGGCAGATGA
CircID chr9:35698808|35699060
ORF Type ORF4
Protein Length 44
Nucleotide Length 132
Protein Sequence MQEADESLNFEEQILEAAKSIAAATSALVKAASAAQRELVAQGK
Nucleotide Sequence TTGCAGGAGGCAGATGAGTCCTTGAACTTTGAGGAGCAGATACTAGAAGCTGCCAAGTCCATTGCAGCAGCCACCAGTGCACTGGTAAAGGCTGCGTCGGCTGCCCAGAGAGAACTAGTGGCCCAAGGGAAG
CircID chr9:35698808|35699060
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence MKPRAKPKVSPAPFLFHPHHGSVPTFISDFTSLSATFAYCRRQMSP
Nucleotide Sequence CTGAAGCCCCGGGCCAAACCCAAGGTCAGTCCTGCTCCCTTCCTCTTCCACCCTCACCATGGCAGTGTCCCCACCTTCATCTCTGACTTTACATCTCTTTCTGCAACCTTCGCTTATTGCAGGAGGCAGATGAGTCCTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab