CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35736436|35736605
Strand -
CircType exon
Host Gene ENSG00000107175.9;
Algorism CIRI2;
Sequence CAGCTGGAGCTGCCTGCCCTGCAGTCAGAAGTGCCGAAAGACAGCACACACCAGTGGTTGGACGGCTCAGACTGTGTACTCCAGGCCCCTGGCAACACTTCCTGCCTGCTGCATTACATGCCTCAGGCTCCCAGTGCAGAGCCTCCCCTGGAGTGGCCATTCCCTGACCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35736436|35736605 hsa-miR-107 -7 0 1
chr9:35736436|35736605 hsa-miR-214-5p 0 0 1
chr9:35736436|35736605 hsa-miR-214-3p 0 0 1
chr9:35736436|35736605 hsa-miR-380-5p 0 0 1
chr9:35736436|35736605 hsa-miR-380-3p 0 0 1
chr9:35736436|35736605 hsa-miR-345-5p 0 0 1
chr9:35736436|35736605 hsa-miR-345-3p 0 0 1
chr9:35736436|35736605 hsa-miR-511-5p 0 0 1
chr9:35736436|35736605 hsa-miR-511-3p 0 0 1
chr9:35736436|35736605 hsa-miR-588 -5 1 1
chr9:35736436|35736605 hsa-miR-622 -2 0 1
chr9:35736436|35736605 hsa-miR-626 -5 0 1
chr9:35736436|35736605 hsa-miR-766-5p 0 0 1
chr9:35736436|35736605 hsa-miR-766-3p 0 0 1
chr9:35736436|35736605 hsa-miR-760 -8 1 1
chr9:35736436|35736605 hsa-miR-920 -9 0 1
chr9:35736436|35736605 hsa-miR-940 -4 0 1
chr9:35736436|35736605 hsa-miR-1202 -7 0 1
chr9:35736436|35736605 hsa-miR-1205 -7 1 1
chr9:35736436|35736605 hsa-miR-1827 -4 0 1
chr9:35736436|35736605 hsa-miR-508-5p -5 1 1
chr9:35736436|35736605 hsa-miR-509-3-5p -4 0 1
chr9:35736436|35736605 hsa-miR-509-5p -3 0 1
chr9:35736436|35736605 hsa-miR-103 0 0 1
chr9:35736436|35736605 hsa-miR-1254 0 0 1
chr9:35736436|35736605 hsa-miR-761 -1 1 0
chr9:35736436|35736605 hsa-miR-2861 -14 1 0
chr9:35736436|35736605 hsa-miR-3155a -18 1 0
chr9:35736436|35736605 hsa-miR-3650 -7 1 0
chr9:35736436|35736605 hsa-miR-3937 -13 1 0
chr9:35736436|35736605 hsa-miR-4418 -5 1 0
chr9:35736436|35736605 hsa-miR-3155b -16 1 0
chr9:35736436|35736605 hsa-miR-4514 -12 1 0
chr9:35736436|35736605 hsa-miR-4526 -19 1 0
chr9:35736436|35736605 hsa-miR-4692 -7 1 0
chr9:35736436|35736605 hsa-miR-12128 -18 1 0
chr9:35736436|35736605 hsa-miR-3192-5p -14 1 0
chr9:35736436|35736605 hsa-miR-4722-5p -17 1 0
chr9:35736436|35736605 hsa-miR-2467-5p -17 1 0
chr9:35736436|35736605 hsa-miR-6827-5p -13 1 0
chr9:35736436|35736605 hsa-miR-4793-3p -11 1 0
chr9:35736436|35736605 hsa-miR-5006-5p -10 1 0
chr9:35736436|35736605 hsa-miR-4690-5p -13 1 0
chr9:35736436|35736605 hsa-miR-6501-5p -13 1 0
chr9:35736436|35736605 hsa-miR-4763-3p -16 1 0
chr9:35736436|35736605 hsa-miR-6851-5p -20 1 0
chr9:35736436|35736605 hsa-miR-6808-5p -11 1 0
chr9:35736436|35736605 hsa-miR-4632-5p -6 1 0
chr9:35736436|35736605 hsa-miR-6735-5p 0 1 0
chr9:35736436|35736605 hsa-miR-4436b-3p -10 1 0
chr9:35736436|35736605 hsa-miR-6511b-5p -17 1 0
chr9:35736436|35736605 hsa-miR-7843-5p 0 1 0
chr9:35736436|35736605 hsa-miR-3116 -6 1 0
chr9:35736436|35736605 hsa-miR-3619-5p -15 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:35736436|35736605
ORF Type ORF1
Protein Length 55
Nucleotide Length 165
Protein Sequence MELPALQSEVPKDSTHQWLDGSDCVLQAPGNTSCLLHYMPQAPSAEPPLEWPFPD
Nucleotide Sequence CTGGAGCTGCCTGCCCTGCAGTCAGAAGTGCCGAAAGACAGCACACACCAGTGGTTGGACGGCTCAGACTGTGTACTCCAGGCCCCTGGCAACACTTCCTGCCTGCTGCATTACATGCCTCAGGCTCCCAGTGCAGAGCCTCCCCTGGAGTGGCCATTCCCTGAC
CircID chr9:35736436|35736605
ORF Type ORF2
Protein Length 52
Nucleotide Length 156
Protein Sequence MPCSQKCRKTAHTSGWTAQTVYSRPLATLPACCITCLRLPVQSLPWSGHSLT
Nucleotide Sequence CTGCCCTGCAGTCAGAAGTGCCGAAAGACAGCACACACCAGTGGTTGGACGGCTCAGACTGTGTACTCCAGGCCCCTGGCAACACTTCCTGCCTGCTGCATTACATGCCTCAGGCTCCCAGTGCAGAGCCTCCCCTGGAGTGGCCATTCCCTGACC
CircID chr9:35736436|35736605
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MCTPGPWQHFLPAALHASGSQCRASPGVAIP
Nucleotide Sequence CTGTGTACTCCAGGCCCCTGGCAACACTTCCTGCCTGCTGCATTACATGCCTCAGGCTCCCAGTGCAGAGCCTCCCCTGGAGTGGCCATTCCCTGA
CircID chr9:35736436|35736605
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MPGAWSTQSEPSNHWCVLSFGTSDCRAGSSS
Nucleotide Sequence TTGCCAGGGGCCTGGAGTACACAGTCTGAGCCGTCCAACCACTGGTGTGTGCTGTCTTTCGGCACTTCTGACTGCAGGGCAGGCAGCTCCAGC
CircID chr9:35736436|35736605
ORF Type ORF5
Protein Length 53
Nucleotide Length 159
Protein Sequence MATPGEALHWEPEACNAAGRKCCQGPGVHSLSRPTTGVCCLSALLTAGQAAPA
Nucleotide Sequence ATGGCCACTCCAGGGGAGGCTCTGCACTGGGAGCCTGAGGCATGTAATGCAGCAGGCAGGAAGTGTTGCCAGGGGCCTGGAGTACACAGTCTGAGCCGTCCAACCACTGGTGTGTGCTGTCTTTCGGCACTTCTGACTGCAGGGCAGGCAGCTCCAGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab