CircRNA Information

General Information
circRNA Basic Information
CircID chr9:35739998|35740230
Strand -
CircType exon
Host Gene ENSG00000070610.13;
Algorism CIRI2;
Sequence CTGTCATCCAATACCGGGCTCTGCCAAGCTGAGATCCTCTCTTCCCACTCTGCGTATCGGCACAGTGCATAGTGGCTGAGGGCAGGTGCTGCATCTCCATCCTGGCCAAAGAACCTTGTATACCGCCTGGGGTGGGAAGGGGAAGGATGAACACAAGCCCCAGGTCAGAGCCCCAGCACTCTGGATCCTTACACTTTCTTGGTCCCCTCACCTGTAGTGGACTTGGCCTTTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:35739998|35740230 hsa-miR-107 0 0 1
chr9:35739998|35740230 hsa-miR-381-5p 0 0 1
chr9:35739998|35740230 hsa-miR-381-3p 0 0 1
chr9:35739998|35740230 hsa-miR-552-5p 0 0 1
chr9:35739998|35740230 hsa-miR-552-3p 0 0 1
chr9:35739998|35740230 hsa-miR-581 0 0 1
chr9:35739998|35740230 hsa-miR-588 0 0 1
chr9:35739998|35740230 hsa-miR-620 0 0 1
chr9:35739998|35740230 hsa-miR-624-5p 0 0 1
chr9:35739998|35740230 hsa-miR-624-3p 0 0 1
chr9:35739998|35740230 hsa-miR-631 1 0 1
chr9:35739998|35740230 hsa-miR-300 0 0 1
chr9:35739998|35740230 hsa-miR-760 0 1 1
chr9:35739998|35740230 hsa-miR-1206 0 0 1
chr9:35739998|35740230 hsa-miR-1255a 0 0 1
chr9:35739998|35740230 hsa-miR-1270 0 0 1
chr9:35739998|35740230 hsa-miR-125a-3p 0 1 1
chr9:35739998|35740230 hsa-miR-512-3p 0 0 1
chr9:35739998|35740230 hsa-miR-423-5p 0 0 1
chr9:35739998|35740230 hsa-miR-525-5p 0 0 1
chr9:35739998|35740230 hsa-miR-1224-3p 0 0 1
chr9:35739998|35740230 hsa-miR-188-3p 0 0 1
chr9:35739998|35740230 hsa-miR-520a-5p 0 0 1
chr9:35739998|35740230 hsa-miR-502-3p 0 0 1
chr9:35739998|35740230 hsa-miR-501-3p 0 0 1
chr9:35739998|35740230 hsa-miR-1260 0 0 1
chr9:35739998|35740230 hsa-miR-1280 0 0 1
chr9:35739998|35740230 hsa-miR-103 0 0 1
chr9:35739998|35740230 hsa-miR-1255b 0 0 1
chr9:35739998|35740230 hsa-miR-9 0 0 1
chr9:35739998|35740230 hsa-miR-661 1 0 0
chr9:35739998|35740230 hsa-miR-762 1 0 0
chr9:35739998|35740230 hsa-miR-940 1 0 0
chr9:35739998|35740230 hsa-miR-1260a 0 1 0
chr9:35739998|35740230 hsa-miR-2861 1 0 0
chr9:35739998|35740230 hsa-miR-3132 1 0 0
chr9:35739998|35740230 hsa-miR-3176 1 0 0
chr9:35739998|35740230 hsa-miR-4256 0 1 0
chr9:35739998|35740230 hsa-miR-3661 0 1 0
chr9:35739998|35740230 hsa-miR-3937 0 1 0
chr9:35739998|35740230 hsa-miR-2392 0 1 0
chr9:35739998|35740230 hsa-miR-4538 0 1 0
chr9:35739998|35740230 hsa-miR-4683 1 0 0
chr9:35739998|35740230 hsa-miR-4730 1 1 0
chr9:35739998|35740230 hsa-miR-4739 1 0 0
chr9:35739998|35740230 hsa-miR-5192 1 0 0
chr9:35739998|35740230 hsa-miR-5787 1 0 0
chr9:35739998|35740230 hsa-miR-6069 1 0 0
chr9:35739998|35740230 hsa-miR-6090 1 0 0
chr9:35739998|35740230 hsa-miR-6860 1 0 0
chr9:35739998|35740230 hsa-miR-7706 1 0 0
chr9:35739998|35740230 hsa-miR-8089 1 0 0
chr9:35739998|35740230 hsa-miR-9718 1 0 0
chr9:35739998|35740230 hsa-miR-12127 1 0 0
chr9:35739998|35740230 hsa-miR-18a-3p 0 1 0
chr9:35739998|35740230 hsa-miR-6734-5p 0 1 0
chr9:35739998|35740230 hsa-miR-3157-5p 0 1 0
chr9:35739998|35740230 hsa-miR-6765-5p 1 0 0
chr9:35739998|35740230 hsa-miR-7106-5p 1 1 0
chr9:35739998|35740230 hsa-miR-6822-3p 1 0 0
chr9:35739998|35740230 hsa-miR-4708-5p 0 1 0
chr9:35739998|35740230 hsa-miR-6892-3p 1 0 0
chr9:35739998|35740230 hsa-miR-3677-5p 1 0 0
chr9:35739998|35740230 hsa-miR-4677-5p 1 0 0
chr9:35739998|35740230 hsa-miR-197-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6787-3p 0 1 0
chr9:35739998|35740230 hsa-miR-185-3p 1 0 0
chr9:35739998|35740230 hsa-miR-6827-5p 1 0 0
chr9:35739998|35740230 hsa-miR-2467-3p 1 0 0
chr9:35739998|35740230 hsa-miR-6810-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6735-3p 1 0 0
chr9:35739998|35740230 hsa-miR-1343-3p 1 0 0
chr9:35739998|35740230 hsa-miR-6786-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6852-5p 0 1 0
chr9:35739998|35740230 hsa-miR-1909-5p 1 0 0
chr9:35739998|35740230 hsa-miR-4707-3p 1 0 0
chr9:35739998|35740230 hsa-miR-3191-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6749-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6824-5p 1 0 0
chr9:35739998|35740230 hsa-miR-3922-5p 1 0 0
chr9:35739998|35740230 hsa-miR-7846-3p 1 0 0
chr9:35739998|35740230 hsa-miR-4661-3p 0 1 0
chr9:35739998|35740230 hsa-miR-6804-3p 1 1 0
chr9:35739998|35740230 hsa-miR-204-5p 0 1 0
chr9:35739998|35740230 hsa-miR-4750-3p 1 0 0
chr9:35739998|35740230 hsa-miR-6734-3p 0 1 0
chr9:35739998|35740230 hsa-miR-3144-5p 0 1 0
chr9:35739998|35740230 hsa-miR-4763-3p 1 1 0
chr9:35739998|35740230 hsa-miR-6778-5p 1 1 0
chr9:35739998|35740230 hsa-miR-6726-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6752-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6756-5p 1 0 0
chr9:35739998|35740230 hsa-miR-7107-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6779-5p 1 0 0
chr9:35739998|35740230 hsa-miR-4685-3p 1 0 0
chr9:35739998|35740230 hsa-miR-6836-5p 1 0 0
chr9:35739998|35740230 hsa-miR-1909-3p 1 0 0
chr9:35739998|35740230 hsa-miR-328-5p 1 0 0
chr9:35739998|35740230 hsa-miR-4649-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6738-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6794-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6795-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6887-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6831-5p 1 0 0
chr9:35739998|35740230 hsa-miR-4758-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6731-5p 1 1 0
chr9:35739998|35740230 hsa-miR-6856-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6877-3p 1 0 0
chr9:35739998|35740230 hsa-miR-6785-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6791-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6822-5p 1 0 0
chr9:35739998|35740230 hsa-miR-6756-3p 0 1 0
chr9:35739998|35740230 hsa-miR-11181-5p 1 0 0
chr9:35739998|35740230 hsa-miR-5006-3p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:35739998|35740230
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MHLHPGQRTLYTAWGGKGKDEHKPQVRAPALWILTLSWSPHL
Nucleotide Sequence CTGCATCTCCATCCTGGCCAAAGAACCTTGTATACCGCCTGGGGTGGGAAGGGGAAGGATGAACACAAGCCCCAGGTCAGAGCCCCAGCACTCTGGATCCTTACACTTTCTTGGTCCCCTCACCTGTAG
CircID chr9:35739998|35740230
ORF Type ORF2
Protein Length 43
Nucleotide Length 132
Protein Sequence MAKEPCIPPGVGRGRMNTSPRSEPQHSGSLHFLGPLTCSGLGL
Nucleotide Sequence CTGGCCAAAGAACCTTGTATACCGCCTGGGGTGGGAAGGGGAAGGATGAACACAAGCCCCAGGTCAGAGCCCCAGCACTCTGGATCCTTACACTTTCTTGGTCCCCTCACCTGTAGTGGACTTGGCCTTTAG
CircID chr9:35739998|35740230
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MGLVFILPLPTPGGIQGSLARMEMQHLPSATMHCADTQSGKRGSQLGRARYWMT
Nucleotide Sequence CTGGGGCTTGTGTTCATCCTTCCCCTTCCCACCCCAGGCGGTATACAAGGTTCTTTGGCCAGGATGGAGATGCAGCACCTGCCCTCAGCCACTATGCACTGTGCCGATACGCAGAGTGGGAAGAGAGGATCTCAGCTTGGCAGAGCCCGGTATTGGATGACA
CircID chr9:35739998|35740230
ORF Type ORF4
Protein Length 54
Nucleotide Length 165
Protein Sequence MTWGLCSSFPFPPQAVYKVLWPGWRCSTCPQPLCTVPIRRVGREDLSLAEPGIG
Nucleotide Sequence CTGACCTGGGGCTTGTGTTCATCCTTCCCCTTCCCACCCCAGGCGGTATACAAGGTTCTTTGGCCAGGATGGAGATGCAGCACCTGCCCTCAGCCACTATGCACTGTGCCGATACGCAGAGTGGGAAGAGAGGATCTCAGCTTGGCAGAGCCCGGTATTGGATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab