CircRNA Information

General Information
circRNA Basic Information
CircID chr9:3827076|3827277
Strand -
CircType exon
Host Gene ENSG00000107249.20;
Algorism CIRI2;
Sequence CTCTACCTTCCCAAGATGATCAGACAATGGCGGCTGGTGGGGATATATGAACCACAGTCAGGAAGAGGGTAAGAGGGATGCAAAAAGAGGGTGGAGAGAAGTGTAGGGAAGAGACAGACAGATGAGTGGATATCCTGAAAAACGTTAGTAAAATCTGAGCACTGGAAGTCAAGTATCACTAGGTTTGGTTTTCCAAGGGAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:3827076|3827277 hsa-miR-204-5p 0 0 1
chr9:3827076|3827277 hsa-miR-204-3p 0 0 1
chr9:3827076|3827277 hsa-miR-211-5p 0 0 1
chr9:3827076|3827277 hsa-miR-211-3p 0 0 1
chr9:3827076|3827277 hsa-miR-507 0 0 1
chr9:3827076|3827277 hsa-miR-557 0 0 1
chr9:3827076|3827277 hsa-miR-593-5p 0 0 1
chr9:3827076|3827277 hsa-miR-593-3p 0 0 1
chr9:3827076|3827277 hsa-miR-617 0 0 1
chr9:3827076|3827277 hsa-miR-623 0 0 1
chr9:3827076|3827277 hsa-miR-632 0 0 1
chr9:3827076|3827277 hsa-miR-635 0 0 1
chr9:3827076|3827277 hsa-miR-942-5p 0 0 1
chr9:3827076|3827277 hsa-miR-942-3p 0 0 1
chr9:3827076|3827277 hsa-miR-943 0 0 1
chr9:3827076|3827277 hsa-miR-1226-5p 0 0 1
chr9:3827076|3827277 hsa-miR-1226-3p 0 0 1
chr9:3827076|3827277 hsa-miR-1231 0 0 1
chr9:3827076|3827277 hsa-miR-1236-5p 0 0 1
chr9:3827076|3827277 hsa-miR-1236-3p 0 0 1
chr9:3827076|3827277 hsa-miR-1200 0 0 1
chr9:3827076|3827277 hsa-miR-1825 0 0 1
chr9:3827076|3827277 hsa-miR-129-5p 0 0 1
chr9:3827076|3827277 hsa-miR-145-5p 0 0 1
chr9:3827076|3827277 hsa-miR-324-5p 0 0 1
chr9:3827076|3827277 hsa-miR-199a-5p 1 1 1
chr9:3827076|3827277 hsa-miR-199b-5p 1 1 1
chr9:3827076|3827277 hsa-miR-450b-5p 0 0 1
chr9:3827076|3827277 hsa-miR-642 0 0 1
chr9:3827076|3827277 hsa-miR-1245 0 0 1
chr9:3827076|3827277 hsa-miR-1470 1 0 0
chr9:3827076|3827277 hsa-miR-4258 1 0 0
chr9:3827076|3827277 hsa-miR-3615 1 0 0
chr9:3827076|3827277 hsa-miR-9898 1 0 0
chr9:3827076|3827277 hsa-miR-12116 1 0 0
chr9:3827076|3827277 hsa-miR-203a-5p 0 1 0
chr9:3827076|3827277 hsa-miR-197-3p 1 0 0
chr9:3827076|3827277 hsa-miR-511-5p 1 0 0
chr9:3827076|3827277 hsa-miR-18a-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6892-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6881-3p 0 1 0
chr9:3827076|3827277 hsa-miR-6875-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6873-3p 1 1 0
chr9:3827076|3827277 hsa-miR-7110-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6832-3p 0 1 0
chr9:3827076|3827277 hsa-miR-6845-3p 1 0 0
chr9:3827076|3827277 hsa-miR-3194-5p 1 0 0
chr9:3827076|3827277 hsa-miR-6728-3p 1 0 0
chr9:3827076|3827277 hsa-miR-4436b-5p 1 0 0
chr9:3827076|3827277 hsa-miR-6815-3p 1 0 0
chr9:3827076|3827277 hsa-miR-7113-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6818-3p 1 1 0
chr9:3827076|3827277 hsa-miR-6809-3p 1 1 0
chr9:3827076|3827277 hsa-miR-7111-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6830-3p 1 0 0
chr9:3827076|3827277 hsa-miR-4446-5p 1 0 0
chr9:3827076|3827277 hsa-miR-378a-5p 0 1 0
chr9:3827076|3827277 hsa-miR-3120-5p 1 1 0
chr9:3827076|3827277 hsa-miR-3180-5p 1 0 0
chr9:3827076|3827277 hsa-miR-6867-3p 1 0 0
chr9:3827076|3827277 hsa-miR-4632-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6746-3p 0 1 0
chr9:3827076|3827277 hsa-miR-7848-3p 0 1 0
chr9:3827076|3827277 hsa-miR-6865-3p 1 1 0
chr9:3827076|3827277 hsa-miR-6886-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6773-3p 1 0 0
chr9:3827076|3827277 hsa-miR-937-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6883-3p 1 0 0
chr9:3827076|3827277 hsa-miR-3620-3p 1 0 0
chr9:3827076|3827277 hsa-miR-1229-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6734-3p 1 1 0
chr9:3827076|3827277 hsa-miR-6515-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6729-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6847-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6761-3p 1 1 0
chr9:3827076|3827277 hsa-miR-3162-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6888-3p 0 1 0
chr9:3827076|3827277 hsa-miR-6731-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6885-3p 1 0 0
chr9:3827076|3827277 hsa-miR-320a-5p 1 0 0
chr9:3827076|3827277 hsa-miR-4755-5p 0 1 0
chr9:3827076|3827277 hsa-miR-6754-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6799-3p 1 0 0
chr9:3827076|3827277 hsa-miR-2682-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6753-3p 1 1 0
chr9:3827076|3827277 hsa-miR-6792-3p 1 0 0
chr9:3827076|3827277 hsa-miR-3059-5p 1 0 0
chr9:3827076|3827277 hsa-miR-483-3p 1 0 0
chr9:3827076|3827277 hsa-miR-485-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6511b-3p 1 0 0
chr9:3827076|3827277 hsa-miR-4768-5p 1 0 0
chr9:3827076|3827277 hsa-miR-6876-3p 1 1 0
chr9:3827076|3827277 hsa-miR-5006-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6827-3p 1 0 0
chr9:3827076|3827277 hsa-miR-6833-3p 1 1 0
chr9:3827076|3827277 hsa-miR-6766-3p 1 0 0
chr9:3827076|3827277 hsa-miR-1-5p 1 0 0
chr9:3827076|3827277 hsa-miR-412-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:3827076|3827277
ORF Type ORF1
Protein Length 50
Nucleotide Length 153
Protein Sequence MTSSAQILLTFFRISTHLSVSSLHFSPPSFCIPLTLFLTVVHISPPAAIV
Nucleotide Sequence TTGACTTCCAGTGCTCAGATTTTACTAACGTTTTTCAGGATATCCACTCATCTGTCTGTCTCTTCCCTACACTTCTCTCCACCCTCTTTTTGCATCCCTCTTACCCTCTTCCTGACTGTGGTTCATATATCCCCACCAGCCGCCATTGTCTGA
CircID chr9:3827076|3827277
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MHPSYPLPDCGSYIPTSRHCLIILGR
Nucleotide Sequence TTGCATCCCTCTTACCCTCTTCCTGACTGTGGTTCATATATCCCCACCAGCCGCCATTGTCTGATCATCTTGGGAAGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab