CircRNA Information

General Information
circRNA Basic Information
CircID chr9:38398052|38398199
Strand +
CircType exon
Host Gene ENSG00000137124.6;
Algorism CIRI2;
Sequence CTCCCAAAAACAAATCCCATGCCCACTAACAATTACTCCTCTATCCCCTGGCAACCACTAATCTATGTTCCATCTCCATGGATTTGCCTAGTATGTATATTTCATATAAATGGAATCATACAGTCTGTAGCCTTGTACATCTCTCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:38398052|38398199 hsa-miR-376c-5p 0 0 1
chr9:38398052|38398199 hsa-miR-376c-3p 0 0 1
chr9:38398052|38398199 hsa-miR-620 0 1 1
chr9:38398052|38398199 hsa-miR-624-5p 0 0 1
chr9:38398052|38398199 hsa-miR-624-3p 0 0 1
chr9:38398052|38398199 hsa-miR-877-5p 0 0 1
chr9:38398052|38398199 hsa-miR-877-3p 0 0 1
chr9:38398052|38398199 hsa-miR-1202 1 0 1
chr9:38398052|38398199 hsa-miR-1270 0 0 1
chr9:38398052|38398199 hsa-miR-140-5p 0 0 1
chr9:38398052|38398199 hsa-miR-1259 0 0 1
chr9:38398052|38398199 hsa-miR-1268a 1 0 0
chr9:38398052|38398199 hsa-miR-2861 1 0 0
chr9:38398052|38398199 hsa-miR-3147 1 0 0
chr9:38398052|38398199 hsa-miR-4253 1 0 0
chr9:38398052|38398199 hsa-miR-4270 1 0 0
chr9:38398052|38398199 hsa-miR-3652 1 0 0
chr9:38398052|38398199 hsa-miR-3945 1 0 0
chr9:38398052|38398199 hsa-miR-1268b 1 0 0
chr9:38398052|38398199 hsa-miR-4450 1 0 0
chr9:38398052|38398199 hsa-miR-4481 1 0 0
chr9:38398052|38398199 hsa-miR-4494 0 1 0
chr9:38398052|38398199 hsa-miR-4534 1 0 0
chr9:38398052|38398199 hsa-miR-4651 1 0 0
chr9:38398052|38398199 hsa-miR-4739 1 0 0
chr9:38398052|38398199 hsa-miR-4784 1 0 0
chr9:38398052|38398199 hsa-miR-5194 1 0 0
chr9:38398052|38398199 hsa-miR-6133 1 0 0
chr9:38398052|38398199 hsa-miR-6860 0 1 0
chr9:38398052|38398199 hsa-miR-7150 1 0 0
chr9:38398052|38398199 hsa-miR-8085 1 0 0
chr9:38398052|38398199 hsa-miR-12118 1 0 0
chr9:38398052|38398199 hsa-miR-4433b-3p 1 0 0
chr9:38398052|38398199 hsa-miR-7106-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6799-5p 0 1 0
chr9:38398052|38398199 hsa-miR-6728-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6757-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6730-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6890-5p 1 0 0
chr9:38398052|38398199 hsa-miR-3622b-5p 1 1 0
chr9:38398052|38398199 hsa-miR-6759-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6721-5p 1 0 0
chr9:38398052|38398199 hsa-miR-197-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6716-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6732-5p 1 0 0
chr9:38398052|38398199 hsa-miR-656-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6798-5p 1 1 0
chr9:38398052|38398199 hsa-miR-6760-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6881-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6874-5p 1 0 0
chr9:38398052|38398199 hsa-miR-5006-5p 1 1 0
chr9:38398052|38398199 hsa-miR-6835-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6853-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6740-5p 1 0 0
chr9:38398052|38398199 hsa-miR-1229-5p 1 0 0
chr9:38398052|38398199 hsa-miR-1228-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6501-5p 1 1 0
chr9:38398052|38398199 hsa-miR-149-3p 1 0 0
chr9:38398052|38398199 hsa-miR-6824-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6789-5p 1 0 0
chr9:38398052|38398199 hsa-miR-5010-5p 1 0 0
chr9:38398052|38398199 hsa-miR-1225-5p 1 0 0
chr9:38398052|38398199 hsa-miR-4763-3p 1 0 0
chr9:38398052|38398199 hsa-miR-6769b-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6787-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6870-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6775-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6726-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6803-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6851-5p 1 0 0
chr9:38398052|38398199 hsa-miR-1249-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6751-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6763-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6780b-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6862-5p 1 0 0
chr9:38398052|38398199 hsa-miR-328-5p 1 0 0
chr9:38398052|38398199 hsa-miR-4649-5p 1 0 0
chr9:38398052|38398199 hsa-miR-4685-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6738-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6777-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6889-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6831-5p 1 0 0
chr9:38398052|38398199 hsa-miR-4758-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6856-5p 1 0 0
chr9:38398052|38398199 hsa-miR-1914-3p 1 0 0
chr9:38398052|38398199 hsa-miR-4700-5p 1 0 0
chr9:38398052|38398199 hsa-miR-4747-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6849-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6529-5p 1 0 0
chr9:38398052|38398199 hsa-miR-6859-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:38398052|38398199
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MPTNNYSSIPWQPLIYVPSPWICLVCIFHINGIIQSVALYISL
Nucleotide Sequence ATGCCCACTAACAATTACTCCTCTATCCCCTGGCAACCACTAATCTATGTTCCATCTCCATGGATTTGCCTAGTATGTATATTTCATATAAATGGAATCATACAGTCTGTAGCCTTGTACATCTCTCTG
CircID chr9:38398052|38398199
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MATTNLCSISMDLPSMYISYKWNHTVCSLVHLS
Nucleotide Sequence CTGGCAACCACTAATCTATGTTCCATCTCCATGGATTTGCCTAGTATGTATATTTCATATAAATGGAATCATACAGTCTGTAGCCTTGTACATCTCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab