CircRNA Information

General Information
circRNA Basic Information
CircID chr9:38627018|38627165
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGACTCAGATCTATGTTGGATTCACAGTACCCGCCTAGTGATGGCAATTTTGTCCAACAGCACATGCCTCCCCTCTCCGGCTCTTTGCTCTTGGGTAGTCTCCCTGACACCTGGCCTTTGTGTCTACCTCAGGAGCTCCCAGCAGCG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:38627018|38627165 hsa-let-7b-5p 0 0 1
chr9:38627018|38627165 hsa-let-7b-3p 0 0 1
chr9:38627018|38627165 hsa-let-7c-5p 0 0 1
chr9:38627018|38627165 hsa-let-7c-3p 0 0 1
chr9:38627018|38627165 hsa-let-7d-5p 0 0 1
chr9:38627018|38627165 hsa-let-7d-3p 0 0 1
chr9:38627018|38627165 hsa-let-7e-5p 0 0 1
chr9:38627018|38627165 hsa-let-7e-3p 0 0 1
chr9:38627018|38627165 hsa-miR-98-5p 0 0 1
chr9:38627018|38627165 hsa-miR-98-3p 0 0 1
chr9:38627018|38627165 hsa-let-7g-5p 0 0 1
chr9:38627018|38627165 hsa-let-7g-3p 0 0 1
chr9:38627018|38627165 hsa-let-7i-5p 0 0 1
chr9:38627018|38627165 hsa-let-7i-3p 0 0 1
chr9:38627018|38627165 hsa-miR-376c-5p 0 0 1
chr9:38627018|38627165 hsa-miR-376c-3p 0 0 1
chr9:38627018|38627165 hsa-miR-379-5p 0 0 1
chr9:38627018|38627165 hsa-miR-379-3p 0 0 1
chr9:38627018|38627165 hsa-miR-335-5p 0 0 1
chr9:38627018|38627165 hsa-miR-335-3p 0 0 1
chr9:38627018|38627165 hsa-miR-202-5p 0 0 1
chr9:38627018|38627165 hsa-miR-202-3p 0 0 1
chr9:38627018|38627165 hsa-miR-650 0 1 1
chr9:38627018|38627165 hsa-miR-892a 0 0 1
chr9:38627018|38627165 hsa-miR-920 0 1 1
chr9:38627018|38627165 hsa-miR-1200 0 0 1
chr9:38627018|38627165 hsa-miR-1257 0 0 1
chr9:38627018|38627165 hsa-miR-1276 0 1 1
chr9:38627018|38627165 hsa-miR-34c-3p 0 0 1
chr9:38627018|38627165 hsa-let-7a 0 0 1
chr9:38627018|38627165 hsa-let-7f 0 0 1
chr9:38627018|38627165 hsa-miR-544b 0 1 0
chr9:38627018|38627165 hsa-miR-3138 1 0 0
chr9:38627018|38627165 hsa-miR-3141 1 0 0
chr9:38627018|38627165 hsa-miR-3935 0 1 0
chr9:38627018|38627165 hsa-miR-3135b 1 0 0
chr9:38627018|38627165 hsa-miR-4487 1 0 0
chr9:38627018|38627165 hsa-miR-4651 1 0 0
chr9:38627018|38627165 hsa-miR-4706 1 0 0
chr9:38627018|38627165 hsa-miR-4739 1 0 0
chr9:38627018|38627165 hsa-miR-5698 1 0 0
chr9:38627018|38627165 hsa-miR-6165 1 0 0
chr9:38627018|38627165 hsa-miR-12128 0 1 0
chr9:38627018|38627165 hsa-miR-6734-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6765-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6825-5p 1 1 0
chr9:38627018|38627165 hsa-miR-6799-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6510-5p 1 0 0
chr9:38627018|38627165 hsa-miR-3692-5p 0 1 0
chr9:38627018|38627165 hsa-miR-3934-5p 0 1 0
chr9:38627018|38627165 hsa-miR-3192-5p 0 1 0
chr9:38627018|38627165 hsa-miR-6806-5p 1 0 0
chr9:38627018|38627165 hsa-miR-197-5p 1 0 0
chr9:38627018|38627165 hsa-miR-3180-3p 1 0 0
chr9:38627018|38627165 hsa-miR-6760-5p 0 1 0
chr9:38627018|38627165 hsa-miR-3156-5p 1 0 0
chr9:38627018|38627165 hsa-miR-7109-5p 1 0 0
chr9:38627018|38627165 hsa-miR-4640-5p 1 0 0
chr9:38627018|38627165 hsa-miR-92b-5p 1 0 0
chr9:38627018|38627165 hsa-miR-4743-5p 1 0 0
chr9:38627018|38627165 hsa-miR-149-3p 1 0 0
chr9:38627018|38627165 hsa-miR-6824-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6781-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6877-5p 1 0 0
chr9:38627018|38627165 hsa-miR-7162-3p 0 1 0
chr9:38627018|38627165 hsa-miR-887-5p 1 0 0
chr9:38627018|38627165 hsa-miR-4776-3p 0 1 0
chr9:38627018|38627165 hsa-miR-4763-3p 1 0 0
chr9:38627018|38627165 hsa-miR-6787-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6816-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6775-5p 1 0 0
chr9:38627018|38627165 hsa-miR-1343-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6754-5p 0 1 0
chr9:38627018|38627165 hsa-miR-6756-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6851-5p 1 0 0
chr9:38627018|38627165 hsa-miR-1249-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6779-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6879-5p 1 0 0
chr9:38627018|38627165 hsa-miR-7111-5p 1 0 0
chr9:38627018|38627165 hsa-miR-4728-5p 1 0 0
chr9:38627018|38627165 hsa-miR-5196-5p 1 0 0
chr9:38627018|38627165 hsa-miR-328-5p 1 0 0
chr9:38627018|38627165 hsa-miR-4726-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6777-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6795-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6846-5p 1 1 0
chr9:38627018|38627165 hsa-miR-6848-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6883-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6831-5p 0 1 0
chr9:38627018|38627165 hsa-miR-6885-5p 1 0 0
chr9:38627018|38627165 hsa-miR-939-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6758-5p 1 1 0
chr9:38627018|38627165 hsa-miR-6856-5p 1 0 0
chr9:38627018|38627165 hsa-miR-1914-3p 1 0 0
chr9:38627018|38627165 hsa-miR-10398-3p 1 0 0
chr9:38627018|38627165 hsa-miR-6785-5p 1 0 0
chr9:38627018|38627165 hsa-miR-6500-5p 1 0 0
chr9:38627018|38627165 hsa-miR-3927-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:38627018|38627165
ORF Type ORF1
Protein Length 45
Nucleotide Length 135
Protein Sequence MLDSQYPPSDGNFVQQHMPPLSGSLLLGSLPDTWPLCLPQELPAA
Nucleotide Sequence ATGTTGGATTCACAGTACCCGCCTAGTGATGGCAATTTTGTCCAACAGCACATGCCTCCCCTCTCCGGCTCTTTGCTCTTGGGTAGTCTCCCTGACACCTGGCCTTTGTGTCTACCTCAGGAGCTCCCAGCAGCG
CircID chr9:38627018|38627165
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MAILSNSTCLPSPALCSWVVSLTPGLCVYLRSSQQ
Nucleotide Sequence ATGGCAATTTTGTCCAACAGCACATGCCTCCCCTCTCCGGCTCTTTGCTCTTGGGTAGTCTCCCTGACACCTGGCCTTTGTGTCTACCTCAGGAGCTCCCAGCAG
CircID chr9:38627018|38627165
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence LLGAPEVDTKARCQGDYPRAKSRRGEACAVGQNCHH
Nucleotide Sequence CTGCTGGGAGCTCCTGAGGTAGACACAAAGGCCAGGTGTCAGGGAGACTACCCAAGAGCAAAGAGCCGGAGAGGGGAGGCATGTGCTGTTGGACAAAATTGCCATCACTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab