CircRNA Information

General Information
circRNA Basic Information
CircID chr9:711853|712002
Strand +
CircType exon
Host Gene ENSG00000107104.17;
Algorism CIRI2;
Sequence GATGTCGTTCATGTTCTCCTCGGCACCCACAGCCACAGACCGGCACTCTCCATTCTCCCTGAGCTCTGAGGAGGCCTCACAGCTGCTGTCCTGGATCTTCTGCTCCAGGGCTTGCATGTCTGCTGTAAGTTGCCGGAACTCCTTTATCCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:711853|712002 hsa-miR-185-5p 0 0 1
chr9:711853|712002 hsa-miR-185-3p 0 0 1
chr9:711853|712002 hsa-miR-600 0 1 1
chr9:711853|712002 hsa-miR-646 0 0 1
chr9:711853|712002 hsa-miR-298 0 0 1
chr9:711853|712002 hsa-miR-891b 0 0 1
chr9:711853|712002 hsa-miR-665 0 0 1
chr9:711853|712002 hsa-miR-922 0 0 1
chr9:711853|712002 hsa-miR-1180-5p 0 0 1
chr9:711853|712002 hsa-miR-1180-3p 0 0 1
chr9:711853|712002 hsa-miR-1294 0 0 1
chr9:711853|712002 hsa-miR-1266-5p 0 0 1
chr9:711853|712002 hsa-miR-1266-3p 0 0 1
chr9:711853|712002 hsa-miR-151-5p 0 0 1
chr9:711853|712002 hsa-miR-371-3p 0 0 1
chr9:711853|712002 hsa-miR-760 1 0 0
chr9:711853|712002 hsa-miR-1291 0 1 0
chr9:711853|712002 hsa-miR-3170 1 0 0
chr9:711853|712002 hsa-miR-4270 1 1 0
chr9:711853|712002 hsa-miR-4428 1 0 0
chr9:711853|712002 hsa-miR-4436a 0 1 0
chr9:711853|712002 hsa-miR-4468 0 1 0
chr9:711853|712002 hsa-miR-4518 1 1 0
chr9:711853|712002 hsa-miR-4533 1 0 0
chr9:711853|712002 hsa-miR-4656 1 0 0
chr9:711853|712002 hsa-miR-4706 1 0 0
chr9:711853|712002 hsa-miR-4739 1 0 0
chr9:711853|712002 hsa-miR-5192 1 0 0
chr9:711853|712002 hsa-miR-5193 0 1 0
chr9:711853|712002 hsa-miR-5698 1 0 0
chr9:711853|712002 hsa-miR-5787 1 0 0
chr9:711853|712002 hsa-miR-7974 1 1 0
chr9:711853|712002 hsa-miR-8085 1 0 0
chr9:711853|712002 hsa-miR-12128 1 1 0
chr9:711853|712002 hsa-miR-6765-5p 1 0 0
chr9:711853|712002 hsa-miR-7106-5p 1 0 0
chr9:711853|712002 hsa-miR-6894-5p 1 1 0
chr9:711853|712002 hsa-miR-6854-5p 0 1 0
chr9:711853|712002 hsa-miR-766-5p 1 0 0
chr9:711853|712002 hsa-miR-4768-3p 0 1 0
chr9:711853|712002 hsa-miR-7114-5p 1 0 0
chr9:711853|712002 hsa-miR-6089 1 0 0
chr9:711853|712002 hsa-miR-6746-5p 1 0 0
chr9:711853|712002 hsa-miR-6741-5p 1 1 0
chr9:711853|712002 hsa-miR-4474-3p 0 1 0
chr9:711853|712002 hsa-miR-6759-5p 0 1 0
chr9:711853|712002 hsa-miR-4655-5p 1 0 0
chr9:711853|712002 hsa-miR-6748-5p 1 1 0
chr9:711853|712002 hsa-miR-6796-5p 1 0 0
chr9:711853|712002 hsa-miR-6798-5p 1 0 0
chr9:711853|712002 hsa-miR-6760-5p 1 1 0
chr9:711853|712002 hsa-miR-3150b-3p 0 1 0
chr9:711853|712002 hsa-miR-5008-5p 1 0 0
chr9:711853|712002 hsa-miR-5088-5p 1 1 0
chr9:711853|712002 hsa-miR-1909-5p 1 1 0
chr9:711853|712002 hsa-miR-3127-5p 1 1 0
chr9:711853|712002 hsa-miR-6824-5p 1 0 0
chr9:711853|712002 hsa-miR-3162-5p 1 0 0
chr9:711853|712002 hsa-miR-664b-5p 1 0 0
chr9:711853|712002 hsa-miR-6769b-5p 1 1 0
chr9:711853|712002 hsa-miR-6870-5p 1 0 0
chr9:711853|712002 hsa-miR-6754-5p 1 1 0
chr9:711853|712002 hsa-miR-6763-5p 1 0 0
chr9:711853|712002 hsa-miR-4685-5p 1 0 0
chr9:711853|712002 hsa-miR-4725-3p 1 0 0
chr9:711853|712002 hsa-miR-6777-5p 1 0 0
chr9:711853|712002 hsa-miR-6794-5p 1 0 0
chr9:711853|712002 hsa-miR-6848-5p 1 0 0
chr9:711853|712002 hsa-miR-6883-5p 1 0 0
chr9:711853|712002 hsa-miR-6889-5p 1 0 0
chr9:711853|712002 hsa-miR-6731-5p 1 0 0
chr9:711853|712002 hsa-miR-6856-5p 1 0 0
chr9:711853|712002 hsa-miR-6791-3p 0 1 0
chr9:711853|712002 hsa-miR-2682-3p 0 1 0
chr9:711853|712002 hsa-miR-6829-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:711853|712002
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MSFMFSSAPTATDRHSPFSLSSEEASQLLSWIFCSRACMSAVSCRNSFI
Nucleotide Sequence ATGTCGTTCATGTTCTCCTCGGCACCCACAGCCACAGACCGGCACTCTCCATTCTCCCTGAGCTCTGAGGAGGCCTCACAGCTGCTGTCCTGGATCTTCTGCTCCAGGGCTTGCATGTCTGCTGTAAGTTGCCGGAACTCCTTTATC
CircID chr9:711853|712002
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MQALEQKIQDSSCEASSELRENGECRSVAVGAEENMNDI
Nucleotide Sequence ATGCAAGCCCTGGAGCAGAAGATCCAGGACAGCAGCTGTGAGGCCTCCTCAGAGCTCAGGGAGAATGGAGAGTGCCGGTCTGTGGCTGTGGGTGCCGAGGAGAACATGAACGACATC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab