CircRNA Information

General Information
circRNA Basic Information
CircID chr9:83678441|83683066
Strand -
CircType exon
Host Gene ENSG00000135018.13;
Algorism find_circ;CIRI2;DCC;
Sequence GCCTCAGGATCATTCAGCTCAGCAAACAAATACAGCTGGAAGCAATGTTACTACATCATCAACTCCTAATAGTAACTCTACATCTGGTTCTGCTACTAGCAACCCTTTTGGTTTAGGTGGCCTTGGGGGACTTGCAGGTCTGAGTAGCTTGGGTTTGAATACTACCAACTTCTCTGAACTACAGAGTCAGATGCAGCGACAACTTTTGTCTAACCCTGAAATGATGGTCCAGATCATGGAAAATCCCTTTGTTCAGAGCATGCTCTCAAATCCTGACCTGATGAGACAGTTAATTATGGCCAATCCACAAATGCAGCAGTTGATACAGAGAAATCCAGAAATTAGTCATATGTTGAATAATCCAGATATAATGAGACAAACGTTGGAACTTGCCAGGAATCCAGCAATGATGCAGGAGATGATGAGGAACCAGGACCGAGCTTTGAGCAACCTAGAAAGCATCCCAGGGGGATATAATGCTTTAAGGCGCATGTACACAGATATTCAGGAACCAATGCTGAGTGCTGCACAAGAGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:83678441|83683066 hsa-miR-143-5p 0 0 1
chr9:83678441|83683066 hsa-miR-143-3p 0 0 1
chr9:83678441|83683066 hsa-miR-155-5p 0 0 1
chr9:83678441|83683066 hsa-miR-155-3p 0 0 1
chr9:83678441|83683066 hsa-miR-335-5p 0 0 1
chr9:83678441|83683066 hsa-miR-335-3p 0 0 1
chr9:83678441|83683066 hsa-miR-545-5p 0 0 1
chr9:83678441|83683066 hsa-miR-545-3p 0 0 1
chr9:83678441|83683066 hsa-miR-618 0 0 1
chr9:83678441|83683066 hsa-miR-633 0 0 1
chr9:83678441|83683066 hsa-miR-659-5p 0 0 1
chr9:83678441|83683066 hsa-miR-659-3p 0 0 1
chr9:83678441|83683066 hsa-miR-802 0 0 1
chr9:83678441|83683066 hsa-miR-873-5p 0 0 1
chr9:83678441|83683066 hsa-miR-873-3p 0 0 1
chr9:83678441|83683066 hsa-miR-1202 0 0 1
chr9:83678441|83683066 hsa-miR-1286 0 0 1
chr9:83678441|83683066 hsa-miR-1272 0 1 1
chr9:83678441|83683066 hsa-miR-1322 0 0 1
chr9:83678441|83683066 hsa-miR-146a-3p 0 1 1
chr9:83678441|83683066 hsa-miR-152-5p 0 1 1
chr9:83678441|83683066 hsa-miR-671-5p 0 0 1
chr9:83678441|83683066 hsa-miR-512-3p 0 1 1
chr9:83678441|83683066 hsa-miR-324-5p 0 0 1
chr9:83678441|83683066 hsa-miR-1207-3p 0 0 1
chr9:83678441|83683066 hsa-miR-338-3p 0 0 1
chr9:83678441|83683066 hsa-miR-299-5p 0 0 1
chr9:83678441|83683066 hsa-miR-524-3p 0 0 1
chr9:83678441|83683066 hsa-miR-525-3p 0 0 1
chr9:83678441|83683066 hsa-miR-499-3p 0 0 1
chr9:83678441|83683066 hsa-miR-921 1 0 0
chr9:83678441|83683066 hsa-miR-2110 1 0 0
chr9:83678441|83683066 hsa-miR-3923 0 1 0
chr9:83678441|83683066 hsa-miR-4525 1 1 0
chr9:83678441|83683066 hsa-miR-3978 1 1 0
chr9:83678441|83683066 hsa-miR-4751 1 0 0
chr9:83678441|83683066 hsa-miR-4784 1 0 0
chr9:83678441|83683066 hsa-miR-6074 0 1 0
chr9:83678441|83683066 hsa-miR-6088 0 1 0
chr9:83678441|83683066 hsa-miR-6165 1 0 0
chr9:83678441|83683066 hsa-miR-8055 0 1 0
chr9:83678441|83683066 hsa-miR-4433a-3p 1 0 0
chr9:83678441|83683066 hsa-miR-6765-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6894-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6854-5p 0 1 0
chr9:83678441|83683066 hsa-miR-6510-5p 1 0 0
chr9:83678441|83683066 hsa-miR-4786-5p 1 0 0
chr9:83678441|83683066 hsa-miR-4768-3p 0 1 0
chr9:83678441|83683066 hsa-miR-4695-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6746-5p 1 0 0
chr9:83678441|83683066 hsa-miR-4722-5p 1 1 0
chr9:83678441|83683066 hsa-miR-505-5p 1 1 0
chr9:83678441|83683066 hsa-miR-6741-5p 0 1 0
chr9:83678441|83683066 hsa-miR-3928-3p 1 1 0
chr9:83678441|83683066 hsa-miR-5589-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6798-5p 1 1 0
chr9:83678441|83683066 hsa-miR-7855-5p 1 0 0
chr9:83678441|83683066 hsa-miR-5006-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6753-5p 1 0 0
chr9:83678441|83683066 hsa-miR-4713-3p 1 0 0
chr9:83678441|83683066 hsa-miR-6834-5p 1 0 0
chr9:83678441|83683066 hsa-miR-4776-5p 1 0 0
chr9:83678441|83683066 hsa-miR-1289 0 1 0
chr9:83678441|83683066 hsa-miR-18a-5p 0 1 0
chr9:83678441|83683066 hsa-miR-4714-3p 0 1 0
chr9:83678441|83683066 hsa-miR-4763-3p 1 0 0
chr9:83678441|83683066 hsa-miR-6851-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6722-3p 1 0 0
chr9:83678441|83683066 hsa-miR-6875-5p 1 0 0
chr9:83678441|83683066 hsa-miR-1909-3p 1 0 0
chr9:83678441|83683066 hsa-miR-4685-5p 1 1 0
chr9:83678441|83683066 hsa-miR-6858-5p 1 0 0
chr9:83678441|83683066 hsa-miR-4633-3p 1 0 0
chr9:83678441|83683066 hsa-miR-6511b-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6750-5p 1 0 0
chr9:83678441|83683066 hsa-miR-18b-5p 0 1 0
chr9:83678441|83683066 hsa-miR-6822-5p 1 0 0
chr9:83678441|83683066 hsa-miR-6859-5p 1 0 0
chr9:83678441|83683066 hsa-miR-3914 0 1 0
chr9:83678441|83683066 hsa-miR-6508-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:83678441|83683066
ORF Type ORF1
Protein Length 116
Nucleotide Length 348
Protein Sequence MQRQLLSNPEMMVQIMENPFVQSMLSNPDLMRQLIMANPQMQQLIQRNPEISHMLNNPDIMRQTLELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQ
Nucleotide Sequence ATGCAGCGACAACTTTTGTCTAACCCTGAAATGATGGTCCAGATCATGGAAAATCCCTTTGTTCAGAGCATGCTCTCAAATCCTGACCTGATGAGACAGTTAATTATGGCCAATCCACAAATGCAGCAGTTGATACAGAGAAATCCAGAAATTAGTCATATGTTGAATAATCCAGATATAATGAGACAAACGTTGGAACTTGCCAGGAATCCAGCAATGATGCAGGAGATGATGAGGAACCAGGACCGAGCTTTGAGCAACCTAGAAAGCATCCCAGGGGGATATAATGCTTTAAGGCGCATGTACACAGATATTCAGGAACCAATGCTGAGTGCTGCACAAGAGCAG
CircID chr9:83678441|83683066
ORF Type ORF2
Protein Length 49
Nucleotide Length 147
Protein Sequence MRLKALYPPGMLSRLLKARSWFLIISCIIAGFLASSNVCLIISGLFNI*
Nucleotide Sequence ATGCGCCTTAAAGCATTATATCCCCCTGGGATGCTTTCTAGGTTGCTCAAAGCTCGGTCCTGGTTCCTCATCATCTCCTGCATCATTGCTGGATTCCTGGCAAGTTCCAACGTTTGTCTCATTATATCTGGATTATTCAACATATGA
CircID chr9:83678441|83683066
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence VQHSALVPEYLCTCALKHYIPLGCFLGCSKLGPGSSSSPASLLDSWQVPTFVSLYLDYSTYD*
Nucleotide Sequence GTGCAGCACTCAGCATTGGTTCCTGAATATCTGTGTACATGCGCCTTAAAGCATTATATCCCCCTGGGATGCTTTCTAGGTTGCTCAAAGCTCGGTCCTGGTTCCTCATCATCTCCTGCATCATTGCTGGATTCCTGGCAAGTTCCAACGTTTGTCTCATTATATCTGGATTATTCAACATATGACTAA
CircID chr9:83678441|83683066
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MRLKALYPPGMLSRLLKARSWFLIISCIIAGFLASSNV
Nucleotide Sequence ATGCGCCTTAAAGCATTATATCCCCCTGGGATGCTTTCTAGGTTGCTCAAAGCTCGGTCCTGGTTCCTCATCATCTCCTGCATCATTGCTGGATTCCTGGCAAGTTCCAACGTCTAA
CircID chr9:83678441|83683066
ORF Type ORF2
Protein Length 77
Nucleotide Length 234
Protein Sequence MVPEYLCTCALKHYIPLGCFLGCSKLGPGSSSSPASLLDSWQVPTSKPKGLLVAEPDVELLLGVDDVVTLLPAVFVC
Nucleotide Sequence TTGGTTCCTGAATATCTGTGTACATGCGCCTTAAAGCATTATATCCCCCTGGGATGCTTTCTAGGTTGCTCAAAGCTCGGTCCTGGTTCCTCATCATCTCCTGCATCATTGCTGGATTCCTGGCAAGTTCCAACGTCTAAACCAAAAGGGTTGCTAGTAGCAGAACCAGATGTAGAGTTACTATTAGGAGTTGATGATGTAGTAACATTGCTTCCAGCTGTATTTGTTTGCTGA
CircID chr9:83678441|83683066
ORF Type ORF3
Protein Length 26
Nucleotide Length 81
Protein Sequence MEAMLLHHQLLIVTLHLVLLLATLLV
Nucleotide Sequence CTGGAAGCAATGTTACTACATCATCAACTCCTAATAGTAACTCTACATCTGGTTCTGCTACTAGCAACCCTTTTGGTTTAG
CircID chr9:83678441|83683066
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MELARNPAMMQEMMRNQDRALSNLESIPGGYNALRRMYTDIQEPMLSAAQEQ
Nucleotide Sequence TTGGAACTTGCCAGGAATCCAGCAATGATGCAGGAGATGATGAGGAACCAGGACCGAGCTTTGAGCAACCTAGAAAGCATCCCAGGGGGATATAATGCTTTAAGGCGCATGTACACAGATATTCAGGAACCAATGCTGAGTGCTGCACAAGAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr9:83678441|83683066 GTF2F1 0 2 0
chr9:83678441|83683066 KHSRP 0 1 0
chr9:83678441|83683066 MOV10 0 8 2
chr9:83678441|83683066 ELAVL1 7 9 6
chr9:83678441|83683066 ELAVL3 0 1 0
chr9:83678441|83683066 SF3B4 0 0 1
chr9:83678441|83683066 FAM120A 0 0 1
chr9:83678441|83683066 CELF2 0 1 0
chr9:83678441|83683066 PRPF8 0 3 3
chr9:83678441|83683066 UPF1 0 4 0
chr9:83678441|83683066 FMR1 0 17 7
chr9:83678441|83683066 CPSF6 0 1 0
chr9:83678441|83683066 TIA1 0 3 0
chr9:83678441|83683066 CNBP 1 2 0
chr9:83678441|83683066 TROVE2 0 0 1
chr9:83678441|83683066 FUS 0 1 1
chr9:83678441|83683066 GNL3 0 2 0
chr9:83678441|83683066 DGCR8 0 0 3
chr9:83678441|83683066 SRSF7 0 4 0
chr9:83678441|83683066 SRSF1 0 2 4
chr9:83678441|83683066 NOP58 0 3 4
chr9:83678441|83683066 U2AF1 0 4 3
chr9:83678441|83683066 CPSF3 1 0 0
chr9:83678441|83683066 ADAR 0 1 0
chr9:83678441|83683066 U2AF2 2 10 6
chr9:83678441|83683066 SRSF9 0 1 0
chr9:83678441|83683066 HNRNPU 0 0 1
chr9:83678441|83683066 DDX54 0 7 12
chr9:83678441|83683066 RBM10 0 1 0
chr9:83678441|83683066 HNRNPA2B1 0 0 1
chr9:83678441|83683066 FIP1L1 1 0 0
chr9:83678441|83683066 PTBP1 9 1 2
chr9:83678441|83683066 HNRNPC 25 6 3
chr9:83678441|83683066 HNRNPD 1 0 0
chr9:83678441|83683066 TRA2A 0 4 2
chr9:83678441|83683066 HNRNPM 1 0 0
chr9:83678441|83683066 ZNF184 0 1 1
chr9:83678441|83683066 HNRNPA1 6 1 0
chr9:83678441|83683066 DDX3X 0 0 1
chr9:83678441|83683066 AGO2 0 5 12
chr9:83678441|83683066 LARP7 0 1 0
chr9:83678441|83683066 SMNDC1 1 0 2
chr9:83678441|83683066 MSI2 0 0 2
chr9:83678441|83683066 ACIN1 0 3 1
chr9:83678441|83683066 LIN28B 3 3 1
chr9:83678441|83683066 RANGAP1 0 2 2
chr9:83678441|83683066 FXR1 0 3 5
chr9:83678441|83683066 FXR2 1 4 5
chr9:83678441|83683066 NUMA1 0 1 0
chr9:83678441|83683066 SND1 0 5 1
chr9:83678441|83683066 IGF2BP1 4 7 16
chr9:83678441|83683066 DICER1 0 1 0
chr9:83678441|83683066 IGF2BP3 2 6 8
chr9:83678441|83683066 IGF2BP2 4 16 22
chr9:83678441|83683066 TARDBP 3 1 1
chr9:83678441|83683066 BUD13 1 3 5
chr9:83678441|83683066 RBFOX2 1 1 0
chr9:83678441|83683066 RBM47 0 3 3
chr9:83678441|83683066 SLTM 0 1 2
chr9:83678441|83683066 EIF4G2 1 0 1
chr9:83678441|83683066 DDX42 0 1 2
chr9:83678441|83683066 CSTF2T 0 2 2
chr9:83678441|83683066 CSTF2 3 0 0
chr9:83678441|83683066 LARP4B 0 1 0
chr9:83678441|83683066 RBM22 0 2 1
chr9:83678441|83683066 XRN2 1 2 1
chr9:83678441|83683066 ZC3H7B 2 0 0
chr9:83678441|83683066 AIFM1 0 1 1
chr9:83678441|83683066 AGO1 0 0 3
chr9:83678441|83683066 EIF4A3 1 3 6
chr9:83678441|83683066 FBL 1 1 4
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab