CircRNA Information

General Information
circRNA Basic Information
CircID chr9:87706554|87706701
Strand -
CircType exon
Host Gene ENSG00000196730.11;
Algorism CIRI2;
Sequence AGAGGGCGACGCGGACATCCGCCTGTGGGTGAATGGCTGCAAGCTGGCCAACCGTGGGGCCGAGCTGCTGGTGCTGCTGGTCAACCACGGCCAGGGCATTGAGGTCCAGGTCCGCGGCCTGGAGACGGAGAAGATCAAGTGCTGCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:87706554|87706701 hsa-miR-15a-5p 0 0 1
chr9:87706554|87706701 hsa-miR-15a-3p 0 0 1
chr9:87706554|87706701 hsa-miR-29a-5p 0 0 1
chr9:87706554|87706701 hsa-miR-29a-3p 0 0 1
chr9:87706554|87706701 hsa-miR-15b-5p 0 0 1
chr9:87706554|87706701 hsa-miR-15b-3p 0 0 1
chr9:87706554|87706701 hsa-miR-195-5p 0 0 1
chr9:87706554|87706701 hsa-miR-195-3p 0 0 1
chr9:87706554|87706701 hsa-miR-29c-5p 0 0 1
chr9:87706554|87706701 hsa-miR-29c-3p 0 0 1
chr9:87706554|87706701 hsa-miR-424-5p 0 0 1
chr9:87706554|87706701 hsa-miR-424-3p 0 0 1
chr9:87706554|87706701 hsa-miR-492 0 0 1
chr9:87706554|87706701 hsa-miR-497-5p 0 0 1
chr9:87706554|87706701 hsa-miR-497-3p 0 0 1
chr9:87706554|87706701 hsa-miR-563 0 0 1
chr9:87706554|87706701 hsa-miR-588 0 0 1
chr9:87706554|87706701 hsa-miR-619-5p 0 0 1
chr9:87706554|87706701 hsa-miR-619-3p 0 0 1
chr9:87706554|87706701 hsa-miR-631 0 0 1
chr9:87706554|87706701 hsa-miR-634 0 1 1
chr9:87706554|87706701 hsa-miR-646 0 0 1
chr9:87706554|87706701 hsa-miR-1301-5p 0 0 1
chr9:87706554|87706701 hsa-miR-1301-3p 0 0 1
chr9:87706554|87706701 hsa-miR-766-5p 0 0 1
chr9:87706554|87706701 hsa-miR-766-3p 0 0 1
chr9:87706554|87706701 hsa-miR-874-5p 0 0 1
chr9:87706554|87706701 hsa-miR-874-3p 0 0 1
chr9:87706554|87706701 hsa-miR-942-5p 0 0 1
chr9:87706554|87706701 hsa-miR-942-3p 0 0 1
chr9:87706554|87706701 hsa-miR-1181 0 0 1
chr9:87706554|87706701 hsa-miR-1226-5p 0 0 1
chr9:87706554|87706701 hsa-miR-1226-3p 0 0 1
chr9:87706554|87706701 hsa-miR-1249-5p 0 0 1
chr9:87706554|87706701 hsa-miR-1249-3p 0 0 1
chr9:87706554|87706701 hsa-miR-146b-3p 0 0 1
chr9:87706554|87706701 hsa-miR-16 0 0 1
chr9:87706554|87706701 hsa-miR-29b 0 0 1
chr9:87706554|87706701 hsa-miR-365 0 0 1
chr9:87706554|87706701 hsa-miR-602 1 0 0
chr9:87706554|87706701 hsa-miR-1295a 0 1 0
chr9:87706554|87706701 hsa-miR-3661 0 1 0
chr9:87706554|87706701 hsa-miR-3937 0 1 0
chr9:87706554|87706701 hsa-miR-4530 0 1 0
chr9:87706554|87706701 hsa-miR-4675 1 1 0
chr9:87706554|87706701 hsa-miR-4734 1 0 0
chr9:87706554|87706701 hsa-miR-4665-3p 1 0 0
chr9:87706554|87706701 hsa-miR-503-5p 0 1 0
chr9:87706554|87706701 hsa-miR-3690 0 1 0
chr9:87706554|87706701 hsa-miR-3065-3p 0 1 0
chr9:87706554|87706701 hsa-miR-4758-3p 0 1 0
chr9:87706554|87706701 hsa-miR-758-5p 0 1 0
chr9:87706554|87706701 hsa-miR-7158-5p 0 1 0
chr9:87706554|87706701 hsa-miR-10392-3p 0 1 0
chr9:87706554|87706701 hsa-miR-6500-5p 1 0 0
chr9:87706554|87706701 hsa-miR-6838-5p 0 1 0
chr9:87706554|87706701 hsa-miR-494-5p 0 1 0
chr9:87706554|87706701 hsa-miR-380-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:87706554|87706701
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MWVNGCKLANRGAELLVLLVNHGQGIEVQVRGLETEKIKCCL
Nucleotide Sequence CTGTGGGTGAATGGCTGCAAGCTGGCCAACCGTGGGGCCGAGCTGCTGGTGCTGCTGGTCAACCACGGCCAGGGCATTGAGGTCCAGGTCCGCGGCCTGGAGACGGAGAAGATCAAGTGCTGCCTG
CircID chr9:87706554|87706701
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MAASWPTVGPSCWCCWSTTARALRSRSAAWRRRRSSAA
Nucleotide Sequence ATGGCTGCAAGCTGGCCAACCGTGGGGCCGAGCTGCTGGTGCTGCTGGTCAACCACGGCCAGGGCATTGAGGTCCAGGTCCGCGGCCTGGAGACGGAGAAGATCAAGTGCTGCC
CircID chr9:87706554|87706701
ORF Type ORF3
Protein Length 36
Nucleotide Length 108
Protein Sequence MDLNALAVVDQQHQQLGPTVGQLAAIHPQADVRVAL
Nucleotide Sequence CTGGACCTCAATGCCCTGGCCGTGGTTGACCAGCAGCACCAGCAGCTCGGCCCCACGGTTGGCCAGCTTGCAGCCATTCACCCACAGGCGGATGTCCGCGTCGCCCTC
CircID chr9:87706554|87706701
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MIFSVSRPRTWTSMPWPWLTSSTSSSAPRLASLQPFTHRRMSASPS
Nucleotide Sequence TTGATCTTCTCCGTCTCCAGGCCGCGGACCTGGACCTCAATGCCCTGGCCGTGGTTGACCAGCAGCACCAGCAGCTCGGCCCCACGGTTGGCCAGCTTGCAGCCATTCACCCACAGGCGGATGTCCGCGTCGCCCTCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab