CircRNA Information

General Information
circRNA Basic Information
CircID chr9:87707387|87707547
Strand +
CircType exon
Host Gene ENSG00000196730.11;
Algorism CIRI2;
Sequence AACGGAATGAGACGGGGAGGGAGGTAGCGGCAGAGAAACAGGTCAAGCCGGAGGGAGGAGTGGCATCCCCCTGGCTGTGGGTGCAGGAAGAAACACCCTCAGCATCTCCAAAGGGAAGGATGGGCTACATCACCCCCTTGCTTCTGCAGTCCAAACAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:87707387|87707547 hsa-miR-192-5p 0 0 1
chr9:87707387|87707547 hsa-miR-192-3p 0 0 1
chr9:87707387|87707547 hsa-miR-204-5p 0 0 1
chr9:87707387|87707547 hsa-miR-204-3p 0 0 1
chr9:87707387|87707547 hsa-miR-211-5p 0 0 1
chr9:87707387|87707547 hsa-miR-211-3p 0 0 1
chr9:87707387|87707547 hsa-miR-215-5p 0 0 1
chr9:87707387|87707547 hsa-miR-215-3p 0 0 1
chr9:87707387|87707547 hsa-miR-609 0 1 1
chr9:87707387|87707547 hsa-miR-620 0 0 1
chr9:87707387|87707547 hsa-miR-623 0 0 1
chr9:87707387|87707547 hsa-miR-631 1 0 1
chr9:87707387|87707547 hsa-miR-298 1 1 1
chr9:87707387|87707547 hsa-miR-1270 0 0 1
chr9:87707387|87707547 hsa-miR-1288-5p 0 0 1
chr9:87707387|87707547 hsa-miR-1288-3p 0 0 1
chr9:87707387|87707547 hsa-miR-483-3p 1 1 1
chr9:87707387|87707547 hsa-miR-509-3-5p 0 0 1
chr9:87707387|87707547 hsa-miR-509-5p 0 0 1
chr9:87707387|87707547 hsa-miR-1269 0 0 1
chr9:87707387|87707547 hsa-miR-768-5p 0 0 1
chr9:87707387|87707547 hsa-miR-1470 1 0 0
chr9:87707387|87707547 hsa-miR-1976 1 0 0
chr9:87707387|87707547 hsa-miR-718 1 0 0
chr9:87707387|87707547 hsa-miR-3183 1 0 0
chr9:87707387|87707547 hsa-miR-4322 1 0 0
chr9:87707387|87707547 hsa-miR-4469 1 1 0
chr9:87707387|87707547 hsa-miR-4525 0 1 0
chr9:87707387|87707547 hsa-miR-1587 1 0 0
chr9:87707387|87707547 hsa-miR-6749-3p 1 1 0
chr9:87707387|87707547 hsa-miR-504-3p 1 0 0
chr9:87707387|87707547 hsa-miR-4665-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6836-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6875-3p 0 1 0
chr9:87707387|87707547 hsa-miR-6873-3p 1 0 0
chr9:87707387|87707547 hsa-miR-4728-3p 0 1 0
chr9:87707387|87707547 hsa-miR-7110-3p 1 1 0
chr9:87707387|87707547 hsa-miR-6787-3p 1 0 0
chr9:87707387|87707547 hsa-miR-877-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6829-5p 1 0 0
chr9:87707387|87707547 hsa-miR-6798-5p 1 1 0
chr9:87707387|87707547 hsa-miR-3130-3p 0 1 0
chr9:87707387|87707547 hsa-miR-6728-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6735-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6882-3p 1 1 0
chr9:87707387|87707547 hsa-miR-6763-3p 1 0 0
chr9:87707387|87707547 hsa-miR-5001-3p 1 0 0
chr9:87707387|87707547 hsa-miR-7113-3p 1 0 0
chr9:87707387|87707547 hsa-miR-3667-3p 1 1 0
chr9:87707387|87707547 hsa-miR-3191-5p 1 0 0
chr9:87707387|87707547 hsa-miR-642b-5p 1 0 0
chr9:87707387|87707547 hsa-miR-6809-3p 1 0 0
chr9:87707387|87707547 hsa-miR-7111-3p 1 0 0
chr9:87707387|87707547 hsa-miR-4667-3p 1 0 0
chr9:87707387|87707547 hsa-miR-1306-5p 1 0 0
chr9:87707387|87707547 hsa-miR-5010-5p 0 1 0
chr9:87707387|87707547 hsa-miR-4646-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6743-3p 1 1 0
chr9:87707387|87707547 hsa-miR-6778-3p 1 0 0
chr9:87707387|87707547 hsa-miR-4632-3p 1 0 0
chr9:87707387|87707547 hsa-miR-4529-3p 1 1 0
chr9:87707387|87707547 hsa-miR-6738-3p 1 1 0
chr9:87707387|87707547 hsa-miR-7152-5p 0 1 0
chr9:87707387|87707547 hsa-miR-6798-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6734-3p 1 0 0
chr9:87707387|87707547 hsa-miR-1249-3p 1 0 0
chr9:87707387|87707547 hsa-miR-642a-5p 1 0 0
chr9:87707387|87707547 hsa-miR-6752-5p 1 1 0
chr9:87707387|87707547 hsa-miR-6842-5p 0 1 0
chr9:87707387|87707547 hsa-miR-4685-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6754-3p 1 0 0
chr9:87707387|87707547 hsa-miR-3620-5p 1 0 0
chr9:87707387|87707547 hsa-miR-10398-5p 1 0 0
chr9:87707387|87707547 hsa-miR-6893-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6756-3p 1 0 0
chr9:87707387|87707547 hsa-miR-5009-5p 1 0 0
chr9:87707387|87707547 hsa-miR-6805-3p 1 0 0
chr9:87707387|87707547 hsa-miR-10400-3p 1 0 0
chr9:87707387|87707547 hsa-miR-3059-5p 1 0 0
chr9:87707387|87707547 hsa-miR-4723-3p 1 0 0
chr9:87707387|87707547 hsa-miR-1234-3p 1 0 0
chr9:87707387|87707547 hsa-miR-6827-3p 0 1 0
chr9:87707387|87707547 hsa-miR-6797-3p 1 0 0
chr9:87707387|87707547 hsa-miR-340-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:87707387|87707547
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MAVGAGRNTLSISKGKDGLHHPLASAVQTD
Nucleotide Sequence CTGGCTGTGGGTGCAGGAAGAAACACCCTCAGCATCTCCAAAGGGAAGGATGGGCTACATCACCCCCTTGCTTCTGCAGTCCAAACAGAC
CircID chr9:87707387|87707547
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MWVQEETPSASPKGRMGYITPLLLQSKQT
Nucleotide Sequence CTGTGGGTGCAGGAAGAAACACCCTCAGCATCTCCAAAGGGAAGGATGGGCTACATCACCCCCTTGCTTCTGCAGTCCAAACAGACC
CircID chr9:87707387|87707547
ORF Type ORF3
Protein Length 28
Nucleotide Length 84
Protein Sequence MHPQPGGCHSSLRLDLFLCRYLPPRLIP
Nucleotide Sequence CTGCACCCACAGCCAGGGGGATGCCACTCCTCCCTCCGGCTTGACCTGTTTCTCTGCCGCTACCTCCCTCCCCGTCTCATTCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab