CircRNA Information

General Information
circRNA Basic Information
CircID chr9:90844480|90844616
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CAATCAACACCTATCAATGCCTCTCTGAAAAGGCCCTCCTTGCACTGGGTAACAGTGGTTCCCTGCTGTGGAGAAACCCACACTGCTGGCACAAAGGGACCCACCCTCTCAGCTGTGGCTGTGAAAGAGGAAAGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:90844480|90844616 hsa-miR-27a-5p 0 0 1
chr9:90844480|90844616 hsa-miR-27a-3p 0 0 1
chr9:90844480|90844616 hsa-miR-148a-5p 0 0 1
chr9:90844480|90844616 hsa-miR-148a-3p 0 0 1
chr9:90844480|90844616 hsa-miR-204-5p 0 0 1
chr9:90844480|90844616 hsa-miR-204-3p 0 0 1
chr9:90844480|90844616 hsa-miR-211-5p 0 0 1
chr9:90844480|90844616 hsa-miR-211-3p 0 0 1
chr9:90844480|90844616 hsa-miR-214-5p 0 0 1
chr9:90844480|90844616 hsa-miR-214-3p 0 0 1
chr9:90844480|90844616 hsa-miR-27b-5p 0 0 1
chr9:90844480|90844616 hsa-miR-27b-3p 0 0 1
chr9:90844480|90844616 hsa-miR-130a-5p 0 0 1
chr9:90844480|90844616 hsa-miR-130a-3p 0 0 1
chr9:90844480|90844616 hsa-miR-152-5p 0 0 1
chr9:90844480|90844616 hsa-miR-152-3p 0 0 1
chr9:90844480|90844616 hsa-miR-301a-5p 0 0 1
chr9:90844480|90844616 hsa-miR-301a-3p 0 0 1
chr9:90844480|90844616 hsa-miR-130b-5p 0 0 1
chr9:90844480|90844616 hsa-miR-130b-3p 0 0 1
chr9:90844480|90844616 hsa-miR-148b-5p 0 0 1
chr9:90844480|90844616 hsa-miR-148b-3p 0 0 1
chr9:90844480|90844616 hsa-miR-629-5p 0 0 1
chr9:90844480|90844616 hsa-miR-629-3p 0 0 1
chr9:90844480|90844616 hsa-miR-454-5p 0 0 1
chr9:90844480|90844616 hsa-miR-454-3p 0 0 1
chr9:90844480|90844616 hsa-miR-301b-5p 0 0 1
chr9:90844480|90844616 hsa-miR-301b-3p 0 0 1
chr9:90844480|90844616 hsa-miR-1227-5p 0 0 1
chr9:90844480|90844616 hsa-miR-1227-3p 0 0 1
chr9:90844480|90844616 hsa-miR-1238-5p 0 0 1
chr9:90844480|90844616 hsa-miR-1238-3p 0 0 1
chr9:90844480|90844616 hsa-miR-1202 1 1 1
chr9:90844480|90844616 hsa-miR-1208 0 0 1
chr9:90844480|90844616 hsa-miR-1256 0 0 1
chr9:90844480|90844616 hsa-miR-1825 0 0 1
chr9:90844480|90844616 hsa-miR-513a-5p 0 0 1
chr9:90844480|90844616 hsa-miR-515-5p 0 0 1
chr9:90844480|90844616 hsa-miR-658 1 0 0
chr9:90844480|90844616 hsa-miR-761 0 1 0
chr9:90844480|90844616 hsa-miR-1182 1 0 0
chr9:90844480|90844616 hsa-miR-2861 1 0 0
chr9:90844480|90844616 hsa-miR-4270 1 0 0
chr9:90844480|90844616 hsa-miR-3945 1 0 0
chr9:90844480|90844616 hsa-miR-4692 1 0 0
chr9:90844480|90844616 hsa-miR-4739 1 0 0
chr9:90844480|90844616 hsa-miR-12128 1 0 0
chr9:90844480|90844616 hsa-miR-6881-3p 0 1 0
chr9:90844480|90844616 hsa-miR-6827-5p 1 0 0
chr9:90844480|90844616 hsa-miR-615-5p 1 0 0
chr9:90844480|90844616 hsa-miR-4691-3p 1 1 0
chr9:90844480|90844616 hsa-miR-3616-3p 1 0 0
chr9:90844480|90844616 hsa-miR-6499-3p 0 1 0
chr9:90844480|90844616 hsa-miR-6832-5p 1 0 0
chr9:90844480|90844616 hsa-miR-4727-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6839-3p 0 1 0
chr9:90844480|90844616 hsa-miR-1207-5p 1 0 0
chr9:90844480|90844616 hsa-miR-4763-3p 1 0 0
chr9:90844480|90844616 hsa-miR-6778-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6743-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6754-5p 1 1 0
chr9:90844480|90844616 hsa-miR-6756-5p 1 0 0
chr9:90844480|90844616 hsa-miR-1249-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6722-3p 1 0 0
chr9:90844480|90844616 hsa-miR-6779-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6797-5p 1 0 0
chr9:90844480|90844616 hsa-miR-4728-5p 1 0 0
chr9:90844480|90844616 hsa-miR-328-5p 1 0 0
chr9:90844480|90844616 hsa-miR-4649-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6729-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6795-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6883-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6887-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6758-5p 0 1 0
chr9:90844480|90844616 hsa-miR-6856-5p 0 1 0
chr9:90844480|90844616 hsa-miR-6891-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6750-5p 0 1 0
chr9:90844480|90844616 hsa-miR-6785-5p 1 0 0
chr9:90844480|90844616 hsa-miR-6822-5p 0 1 0
chr9:90844480|90844616 hsa-miR-3059-5p 0 1 0
chr9:90844480|90844616 hsa-miR-3619-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:90844480|90844616
ORF Type ORF1
Protein Length 37
Nucleotide Length 111
Protein Sequence MKRPSLHWVTVVPCCGETHTAGTKGPTLSAVAVKEER
Nucleotide Sequence CTGAAAAGGCCCTCCTTGCACTGGGTAACAGTGGTTCCCTGCTGTGGAGAAACCCACACTGCTGGCACAAAGGGACCCACCCTCTCAGCTGTGGCTGTGAAAGAGGAAAGG
CircID chr9:90844480|90844616
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MGNSGSLLWRNPHCWHKGTHPLSCGCERGKA
Nucleotide Sequence CTGGGTAACAGTGGTTCCCTGCTGTGGAGAAACCCACACTGCTGGCACAAAGGGACCCACCCTCTCAGCTGTGGCTGTGAAAGAGGAAAGGCT
CircID chr9:90844480|90844616
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MRGWVPLCQQCGFLHSREPLLPSARRAFSERH
Nucleotide Sequence CTGAGAGGGTGGGTCCCTTTGTGCCAGCAGTGTGGGTTTCTCCACAGCAGGGAACCACTGTTACCCAGTGCAAGGAGGGCCTTTTCAGAGAGGCATTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab