CircRNA Information

General Information
circRNA Basic Information
CircID chr9:93471141|93498886
Strand +
CircType exon
Host Gene ENSG00000048828.16;
Algorism find_circ;CIRI2;DCC;
Sequence GTTGCACAGAGCATTGAGGATCACCATCAGGAAGTGATTGGTTTCTGCAGAGAGAATGGTTTCCATGGCTTGGTTGCGTATGACTCTGATTATGCACTGTGCAACATCCCCTACTATTTCAGTGCCCATGCCCTAAAACTGAGCCGGAACGGGAAAAGTCTCACCACAAGCCAATATCTGATGCATGAAGTTGCCAAGCAACTGGACCTGAATCCAAATCGTTTTCCTATTTTTGCTGCTCTCTTAGGCTGGAGTGCAGTGGTGCGATCTTGGCTCACTGCAACCTCTGTCTCCCAGGTTCAAGCGATTCTCATGCCTCAGCCTCCCGAGTAGCTGGGATTACAGGAAATCACATTCTGCCTGATGAAGATCTGGCTTCCTTTCACTGGAGTTTACTTGGTCCAGAACATCCACTAGCCTCACTAAAGGTCCGGGCCCACCAGCTGGTCTTGCCACCTTGCGACGTAGTGATCAAAGCCGTTGCTGACTATGTACGCAACATTCAGGACACCTCTGACTTGGATGCCATAGCTAAAGATGTTTTCCAGCATTCACAGTCTAGAACAGATGACAAAGTTATTCGATTTAAGAGAGCAATTGGATATTATTCAGCGACTAGTAAGCCTATGTCATTTCATCCACCACATTACTTAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:93471141|93498886 hsa-miR-19a-5p 0 0 1
chr9:93471141|93498886 hsa-miR-19a-3p 0 0 1
chr9:93471141|93498886 hsa-miR-27a-5p 0 0 1
chr9:93471141|93498886 hsa-miR-27a-3p 0 0 1
chr9:93471141|93498886 hsa-miR-197-5p 0 0 1
chr9:93471141|93498886 hsa-miR-197-3p 0 0 1
chr9:93471141|93498886 hsa-miR-148a-5p 0 0 1
chr9:93471141|93498886 hsa-miR-148a-3p 0 0 1
chr9:93471141|93498886 hsa-miR-181c-5p 0 0 1
chr9:93471141|93498886 hsa-miR-181c-3p 0 0 1
chr9:93471141|93498886 hsa-miR-27b-5p 0 0 1
chr9:93471141|93498886 hsa-miR-27b-3p 0 0 1
chr9:93471141|93498886 hsa-miR-152-5p 0 0 1
chr9:93471141|93498886 hsa-miR-152-3p 0 0 1
chr9:93471141|93498886 hsa-miR-135b-5p 0 0 1
chr9:93471141|93498886 hsa-miR-135b-3p 0 0 1
chr9:93471141|93498886 hsa-miR-148b-5p 0 0 1
chr9:93471141|93498886 hsa-miR-148b-3p 0 0 1
chr9:93471141|93498886 hsa-miR-345-5p 0 0 1
chr9:93471141|93498886 hsa-miR-345-3p 0 0 1
chr9:93471141|93498886 hsa-miR-384 0 0 1
chr9:93471141|93498886 hsa-miR-431-5p 0 0 1
chr9:93471141|93498886 hsa-miR-431-3p 0 0 1
chr9:93471141|93498886 hsa-miR-492 0 0 1
chr9:93471141|93498886 hsa-miR-181d-5p 0 0 1
chr9:93471141|93498886 hsa-miR-181d-3p 0 0 1
chr9:93471141|93498886 hsa-miR-587 0 0 1
chr9:93471141|93498886 hsa-miR-616-5p 0 0 1
chr9:93471141|93498886 hsa-miR-616-3p 0 0 1
chr9:93471141|93498886 hsa-miR-656-5p 0 0 1
chr9:93471141|93498886 hsa-miR-656-3p 0 0 1
chr9:93471141|93498886 hsa-miR-890 0 0 1
chr9:93471141|93498886 hsa-miR-873-5p 0 0 1
chr9:93471141|93498886 hsa-miR-873-3p 0 0 1
chr9:93471141|93498886 hsa-miR-543 0 1 1
chr9:93471141|93498886 hsa-miR-1179 0 0 1
chr9:93471141|93498886 hsa-miR-1226-5p 0 0 1
chr9:93471141|93498886 hsa-miR-1226-3p 0 0 1
chr9:93471141|93498886 hsa-miR-1229-5p 0 0 1
chr9:93471141|93498886 hsa-miR-1229-3p 0 0 1
chr9:93471141|93498886 hsa-miR-1205 0 0 1
chr9:93471141|93498886 hsa-miR-548e-5p 0 0 1
chr9:93471141|93498886 hsa-miR-548e-3p 0 0 1
chr9:93471141|93498886 hsa-miR-1261 0 0 1
chr9:93471141|93498886 hsa-miR-1197 0 0 1
chr9:93471141|93498886 hsa-miR-31-5p 0 1 1
chr9:93471141|93498886 hsa-miR-129-5p 1 0 1
chr9:93471141|93498886 hsa-miR-1224-5p 0 0 1
chr9:93471141|93498886 hsa-miR-1184 0 0 1
chr9:93471141|93498886 hsa-miR-330-3p 0 0 1
chr9:93471141|93498886 hsa-miR-628-3p 0 0 1
chr9:93471141|93498886 hsa-miR-509-3p 0 1 1
chr9:93471141|93498886 hsa-miR-1207-3p 0 0 1
chr9:93471141|93498886 hsa-miR-513a-5p 0 0 1
chr9:93471141|93498886 hsa-miR-628-5p 0 0 1
chr9:93471141|93498886 hsa-miR-338-3p 0 0 1
chr9:93471141|93498886 hsa-miR-337-3p 0 0 1
chr9:93471141|93498886 hsa-miR-502-3p 0 0 1
chr9:93471141|93498886 hsa-miR-501-3p 0 0 1
chr9:93471141|93498886 hsa-miR-491-3p 0 0 1
chr9:93471141|93498886 hsa-miR-548a-3p 0 0 1
chr9:93471141|93498886 hsa-miR-220b 0 0 1
chr9:93471141|93498886 hsa-miR-128 0 0 1
chr9:93471141|93498886 hsa-miR-181a 0 0 1
chr9:93471141|93498886 hsa-miR-181b 0 0 1
chr9:93471141|93498886 hsa-miR-323-3p 0 0 1
chr9:93471141|93498886 hsa-miR-548f 0 0 1
chr9:93471141|93498886 hsa-miR-135a 0 0 1
chr9:93471141|93498886 hsa-miR-19b 0 0 1
chr9:93471141|93498886 hsa-miR-544 0 0 1
chr9:93471141|93498886 hsa-miR-923 0 0 1
chr9:93471141|93498886 hsa-miR-1245 0 0 1
chr9:93471141|93498886 hsa-miR-1185 0 0 1
chr9:93471141|93498886 hsa-miR-1231 1 0 0
chr9:93471141|93498886 hsa-miR-1538 1 0 0
chr9:93471141|93498886 hsa-miR-3181 1 0 0
chr9:93471141|93498886 hsa-miR-378c 0 1 0
chr9:93471141|93498886 hsa-miR-4310 0 1 0
chr9:93471141|93498886 hsa-miR-4262 0 1 0
chr9:93471141|93498886 hsa-miR-378f 0 1 0
chr9:93471141|93498886 hsa-miR-378h 0 1 0
chr9:93471141|93498886 hsa-miR-4466 1 0 0
chr9:93471141|93498886 hsa-miR-4641 0 1 0
chr9:93471141|93498886 hsa-miR-8078 0 1 0
chr9:93471141|93498886 hsa-miR-8079 0 1 0
chr9:93471141|93498886 hsa-miR-138-5p 1 0 0
chr9:93471141|93498886 hsa-miR-134-5p 1 0 0
chr9:93471141|93498886 hsa-miR-29b-2-5p 1 1 0
chr9:93471141|93498886 hsa-miR-5187-3p 0 1 0
chr9:93471141|93498886 hsa-miR-4715-3p 0 1 0
chr9:93471141|93498886 hsa-miR-4732-5p 1 0 0
chr9:93471141|93498886 hsa-miR-6501-5p 0 1 0
chr9:93471141|93498886 hsa-miR-3158-5p 0 1 0
chr9:93471141|93498886 hsa-miR-1225-5p 1 0 0
chr9:93471141|93498886 hsa-miR-6743-3p 1 0 0
chr9:93471141|93498886 hsa-miR-5000-3p 1 1 0
chr9:93471141|93498886 hsa-miR-6882-5p 1 1 0
chr9:93471141|93498886 hsa-miR-7852-3p 0 1 0
chr9:93471141|93498886 hsa-miR-3184-3p 0 1 0
chr9:93471141|93498886 hsa-miR-3157-3p 0 1 0
chr9:93471141|93498886 hsa-miR-6754-5p 0 1 0
chr9:93471141|93498886 hsa-miR-4728-5p 1 0 0
chr9:93471141|93498886 hsa-miR-4685-5p 1 0 0
chr9:93471141|93498886 hsa-miR-3940-5p 1 0 0
chr9:93471141|93498886 hsa-miR-1199-5p 0 1 0
chr9:93471141|93498886 hsa-miR-378a-3p 0 1 0
chr9:93471141|93498886 hsa-miR-6724-5p 1 0 0
chr9:93471141|93498886 hsa-miR-6511b-3p 1 0 0
chr9:93471141|93498886 hsa-miR-378d 0 1 0
chr9:93471141|93498886 hsa-miR-200c-5p 1 0 0
chr9:93471141|93498886 hsa-miR-7157-5p 0 1 0
chr9:93471141|93498886 hsa-miR-10525-3p 0 1 0
chr9:93471141|93498886 hsa-miR-301a-5p 0 1 0
chr9:93471141|93498886 hsa-miR-301b-5p 0 1 0
chr9:93471141|93498886 hsa-miR-499a-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:93471141|93498886
ORF Type ORF1
Protein Length 27
Nucleotide Length 84
Protein Sequence MATSCIRYWLVVRLFPFRLSFRAWALK
Nucleotide Sequence TTGGCAACTTCATGCATCAGATATTGGCTTGTGGTGAGACTTTTCCCGTTCCGGCTCAGTTTTAGGGCATGGGCACTGAAATAG
CircID chr9:93471141|93498886
ORF Type ORF2
Protein Length 47
Nucleotide Length 144
Protein Sequence MLENIFSYGIQVRGVLNVAYIVSNGFDHYVARWQDQLVGPDLREQQK
Nucleotide Sequence ATGCTGGAAAACATCTTTAGCTATGGCATCCAAGTCAGAGGTGTCCTGAATGTTGCGTACATAGTCAGCAACGGCTTTGATCACTACGTCGCAAGGTGGCAAGACCAGCTGGTGGGCCCGGACCTAAGAGAGCAGCAAAAATAG
CircID chr9:93471141|93498886
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MGTEIVGDVAQCIIRVIRNQAMETILSAETNHFLMVILNALCN
Nucleotide Sequence ATGGGCACTGAAATAGTAGGGGATGTTGCACAGTGCATAATCAGAGTCATACGCAACCAAGCCATGGAAACCATTCTCTCTGCAGAAACCAATCACTTCCTGATGGTGATCCTCAATGCTCTGTGCAAC
CircID chr9:93471141|93498886
ORF Type ORF4
Protein Length 78
Nucleotide Length 237
Protein Sequence MVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYLMHEVAKQLDLNPNRFPIFAALLGPGPPAGLATLRRSDQSRC
Nucleotide Sequence TTGGTTGCGTATGACTCTGATTATGCACTGTGCAACATCCCCTACTATTTCAGTGCCCATGCCCTAAAACTGAGCCGGAACGGGAAAAGTCTCACCACAAGCCAATATCTGATGCATGAAGTTGCCAAGCAACTGGACCTGAATCCAAATCGTTTTCCTATTTTTGCTGCTCTCTTAGGTCCGGGCCCACCAGCTGGTCTTGCCACCTTGCGACGTAGTGATCAAAGCCGTTGCTGA
CircID chr9:93471141|93498886
ORF Type ORF5
Protein Length 32
Nucleotide Length 99
Protein Sequence MVSAERMVSMAWLRMTLIMHCATSPTISVPMP
Nucleotide Sequence TTGGTTTCTGCAGAGAGAATGGTTTCCATGGCTTGGTTGCGTATGACTCTGATTATGCACTGTGCAACATCCCCTACTATTTCAGTGCCCATGCCCTAA
CircID chr9:93471141|93498886
ORF Type ORF6
Protein Length 70
Nucleotide Length 210
Protein Sequence MVLPPCDVVIKAVADYVRNIQDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAIGYYSATSKPMSFHPPHYL
Nucleotide Sequence CTGGTCTTGCCACCTTGCGACGTAGTGATCAAAGCCGTTGCTGACTATGTACGCAACATTCAGGACACCTCTGACTTGGATGCCATAGCTAAAGATGTTTTCCAGCATTCACAGTCTAGAACAGATGACAAAGTTATTCGATTTAAGAGAGCAATTGGATATTATTCAGCGACTAGTAAGCCTATGTCATTTCATCCACCACATTACTTA
CircID chr9:93471141|93498886
ORF Type ORF7
Protein Length 38
Nucleotide Length 117
Protein Sequence MFSSIHSLEQMTKLFDLREQLDIIQRLVSLCHFIHHIT
Nucleotide Sequence ATGTTTTCCAGCATTCACAGTCTAGAACAGATGACAAAGTTATTCGATTTAAGAGAGCAATTGGATATTATTCAGCGACTAGTAAGCCTATGTCATTTCATCCACCACATTACTTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr9:93471141|93498886 NOP56 0 0 1
chr9:93471141|93498886 MOV10 1 0 4
chr9:93471141|93498886 ELAVL1 1 1 4
chr9:93471141|93498886 SF3B4 1 0 0
chr9:93471141|93498886 YTHDF1 0 0 1
chr9:93471141|93498886 RPS3 0 0 1
chr9:93471141|93498886 TAF15 1 0 0
chr9:93471141|93498886 CAPRIN1 0 0 1
chr9:93471141|93498886 FMR1 0 0 8
chr9:93471141|93498886 FUS 3 0 0
chr9:93471141|93498886 DGCR8 1 0 1
chr9:93471141|93498886 SRSF7 1 0 2
chr9:93471141|93498886 SRSF1 0 0 2
chr9:93471141|93498886 NOP58 2 1 7
chr9:93471141|93498886 U2AF1 2 0 1
chr9:93471141|93498886 U2AF2 7 3 8
chr9:93471141|93498886 SRSF9 0 0 1
chr9:93471141|93498886 DDX54 0 3 19
chr9:93471141|93498886 RBM10 0 1 0
chr9:93471141|93498886 HNRNPL 0 1 0
chr9:93471141|93498886 HNRNPM 2 0 0
chr9:93471141|93498886 PTBP1 0 0 3
chr9:93471141|93498886 HNRNPC 2 1 1
chr9:93471141|93498886 TRA2A 0 1 1
chr9:93471141|93498886 ZNF184 0 0 1
chr9:93471141|93498886 DDX3X 0 0 1
chr9:93471141|93498886 SMNDC1 1 0 0
chr9:93471141|93498886 MSI2 0 0 4
chr9:93471141|93498886 ACIN1 0 0 6
chr9:93471141|93498886 LIN28B 0 0 1
chr9:93471141|93498886 FXR1 0 0 1
chr9:93471141|93498886 IGF2BP1 0 3 16
chr9:93471141|93498886 IGF2BP3 0 0 11
chr9:93471141|93498886 IGF2BP2 1 6 23
chr9:93471141|93498886 YTHDC1 0 0 1
chr9:93471141|93498886 BUD13 0 0 1
chr9:93471141|93498886 RBFOX2 0 2 0
chr9:93471141|93498886 RBM47 0 0 3
chr9:93471141|93498886 CSTF2T 0 1 4
chr9:93471141|93498886 TARBP2 0 0 5
chr9:93471141|93498886 FBL 0 3 4
chr9:93471141|93498886 EWSR1 0 0 1
chr9:93471141|93498886 EIF4A3 3 4 7
chr9:93471141|93498886 AGO2 0 0 13
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab