CircRNA Information

General Information
circRNA Basic Information
CircID chr9:93529353|93529580
Strand +
CircType exon
Host Gene ENSG00000048828.15;
Algorism CIRI2;
Sequence CTTCGTCAGGACATGGAAGATGTAGGGGTACATCAGCCCCTTCTTGTGCCTGTGCTCGGCCACTCTCAGCACCTCAGGTGCGACGGGGGGCAGGGGAGGTGTGGTGATGTCCATGTGGTTCCTGGTGGGCATCGACAGGAGGCACGGGATTGGCTGGACAGTGCCCATCTGGCTTCCCTTGCCTTCGGCTAGTTGGCTTCCTGAAGAGGCAGTGGACGAGCCTTCTGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:93529353|93529580 hsa-miR-197-5p 0 0 1
chr9:93529353|93529580 hsa-miR-197-3p 0 0 1
chr9:93529353|93529580 hsa-miR-198 0 0 1
chr9:93529353|93529580 hsa-miR-298 0 0 1
chr9:93529353|93529580 hsa-miR-873-5p 0 0 1
chr9:93529353|93529580 hsa-miR-873-3p 0 0 1
chr9:93529353|93529580 hsa-miR-1228-5p 0 0 1
chr9:93529353|93529580 hsa-miR-1228-3p 0 0 1
chr9:93529353|93529580 hsa-miR-671-5p 0 1 1
chr9:93529353|93529580 hsa-miR-331-3p 0 0 1
chr9:93529353|93529580 hsa-miR-324-3p 1 0 1
chr9:93529353|93529580 hsa-miR-220b 0 0 1
chr9:93529353|93529580 hsa-miR-499-3p 0 0 1
chr9:93529353|93529580 hsa-miR-636 1 0 0
chr9:93529353|93529580 hsa-miR-1913 1 1 0
chr9:93529353|93529580 hsa-miR-1976 1 1 0
chr9:93529353|93529580 hsa-miR-4269 0 1 0
chr9:93529353|93529580 hsa-miR-3945 0 1 0
chr9:93529353|93529580 hsa-miR-6085 0 1 0
chr9:93529353|93529580 hsa-miR-187-3p 0 1 0
chr9:93529353|93529580 hsa-miR-141-5p 0 1 0
chr9:93529353|93529580 hsa-miR-6749-3p 1 0 0
chr9:93529353|93529580 hsa-miR-6747-3p 1 1 0
chr9:93529353|93529580 hsa-miR-6809-5p 0 1 0
chr9:93529353|93529580 hsa-miR-210-5p 1 1 0
chr9:93529353|93529580 hsa-miR-3677-5p 0 1 0
chr9:93529353|93529580 hsa-miR-6741-5p 1 0 0
chr9:93529353|93529580 hsa-miR-6849-3p 1 0 0
chr9:93529353|93529580 hsa-miR-4728-3p 1 0 0
chr9:93529353|93529580 hsa-miR-185-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6829-5p 1 0 0
chr9:93529353|93529580 hsa-miR-6827-5p 0 1 0
chr9:93529353|93529580 hsa-miR-6788-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6852-5p 0 1 0
chr9:93529353|93529580 hsa-miR-4786-3p 0 1 0
chr9:93529353|93529580 hsa-miR-4733-3p 0 1 0
chr9:93529353|93529580 hsa-miR-1306-5p 1 1 0
chr9:93529353|93529580 hsa-miR-2115-5p 0 1 0
chr9:93529353|93529580 hsa-miR-1250-5p 1 1 0
chr9:93529353|93529580 hsa-miR-6785-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6752-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6760-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6761-5p 0 1 0
chr9:93529353|93529580 hsa-miR-6509-3p 0 1 0
chr9:93529353|93529580 hsa-miR-3913-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6813-5p 0 1 0
chr9:93529353|93529580 hsa-miR-675-5p 1 0 0
chr9:93529353|93529580 hsa-miR-939-5p 1 0 0
chr9:93529353|93529580 hsa-miR-6511b-5p 0 1 0
chr9:93529353|93529580 hsa-miR-6791-3p 0 1 0
chr9:93529353|93529580 hsa-miR-2682-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6801-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6810-3p 1 1 0
chr9:93529353|93529580 hsa-miR-6511b-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6781-3p 0 1 0
chr9:93529353|93529580 hsa-miR-6715b-5p 0 1 0
chr9:93529353|93529580 hsa-miR-3622b-3p 0 1 0
chr9:93529353|93529580 hsa-miR-499a-3p 0 1 0
chr9:93529353|93529580 hsa-miR-499b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:93529353|93529580
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MEDVGVHQPLLVPVLGHSQHLRCDGGQGRCGDVHVVPGGHRQEARDWLDSAHLASLAFG
Nucleotide Sequence ATGGAAGATGTAGGGGTACATCAGCCCCTTCTTGTGCCTGTGCTCGGCCACTCTCAGCACCTCAGGTGCGACGGGGGGCAGGGGAGGTGTGGTGATGTCCATGTGGTTCCTGGTGGGCATCGACAGGAGGCACGGGATTGGCTGGACAGTGCCCATCTGGCTTCCCTTGCCTTCGGCTAG
CircID chr9:93529353|93529580
ORF Type ORF2
Protein Length 61
Nucleotide Length 183
Protein Sequence MCLCSATLSTSGATGGRGGVVMSMWFLVGIDRRHGIGWTVPIWLPLPSASWLPEEAVDEPS
Nucleotide Sequence TTGTGCCTGTGCTCGGCCACTCTCAGCACCTCAGGTGCGACGGGGGGCAGGGGAGGTGTGGTGATGTCCATGTGGTTCCTGGTGGGCATCGACAGGAGGCACGGGATTGGCTGGACAGTGCCCATCTGGCTTCCCTTGCCTTCGGCTAGTTGGCTTCCTGAAGAGGCAGTGGACGAGCCTTCT
CircID chr9:93529353|93529580
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MAGQCPSGFPCLRLVGFLKRQWTSLL
Nucleotide Sequence TTGGCTGGACAGTGCCCATCTGGCTTCCCTTGCCTTCGGCTAGTTGGCTTCCTGAAGAGGCAGTGGACGAGCCTTCTG
CircID chr9:93529353|93529580
ORF Type ORF4
Protein Length 56
Nucleotide Length 168
Protein Sequence MGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLMYPYIFHVLTK
Nucleotide Sequence ATGGGCACTGTCCAGCCAATCCCGTGCCTCCTGTCGATGCCCACCAGGAACCACATGGACATCACCACACCTCCCCTGCCCCCCGTCGCACCTGAGGTGCTGAGAGTGGCCGAGCACAGGCACAAGAAGGGGCTGATGTACCCCTACATCTTCCATGTCCTGACGAAG
CircID chr9:93529353|93529580
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MSSQSRASCRCPPGTTWTSPHLPCPPSHLRC
Nucleotide Sequence CTGTCCAGCCAATCCCGTGCCTCCTGTCGATGCCCACCAGGAACCACATGGACATCACCACACCTCCCCTGCCCCCCGTCGCACCTGAGGTGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab