CircRNA Information

General Information
circRNA Basic Information
CircID chr9:94197732|94197906
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCGCATCAGAAGGGGTGTTGGTACTTGCTGCTGGGACAATTAAGGACTGGTCACATCACTGGATCTCTTGCAGACACTCCCCAGCACCAGCCTGGAGTGTGGCAGCTCCACTAGGTGGCTAGACGCAGCAGAGCAGCAGCATTCACAGTGGTCTGTTTCTTAGGGAATCCTACTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:94197732|94197906 hsa-miR-15a-5p 0 0 1
chr9:94197732|94197906 hsa-miR-15a-3p 0 0 1
chr9:94197732|94197906 hsa-miR-22-5p 0 0 1
chr9:94197732|94197906 hsa-miR-22-3p 0 0 1
chr9:94197732|94197906 hsa-miR-15b-5p 0 0 1
chr9:94197732|94197906 hsa-miR-15b-3p 0 0 1
chr9:94197732|94197906 hsa-miR-122-5p 0 0 1
chr9:94197732|94197906 hsa-miR-122-3p 0 0 1
chr9:94197732|94197906 hsa-miR-195-5p 0 0 1
chr9:94197732|94197906 hsa-miR-195-3p 0 0 1
chr9:94197732|94197906 hsa-miR-346 0 0 1
chr9:94197732|94197906 hsa-miR-424-5p 0 0 1
chr9:94197732|94197906 hsa-miR-424-3p 0 0 1
chr9:94197732|94197906 hsa-miR-497-5p 0 0 1
chr9:94197732|94197906 hsa-miR-497-3p 0 0 1
chr9:94197732|94197906 hsa-miR-558 0 1 1
chr9:94197732|94197906 hsa-miR-632 0 0 1
chr9:94197732|94197906 hsa-miR-939-5p 0 0 1
chr9:94197732|94197906 hsa-miR-939-3p 0 0 1
chr9:94197732|94197906 hsa-miR-1237-5p 0 0 1
chr9:94197732|94197906 hsa-miR-1237-3p 0 0 1
chr9:94197732|94197906 hsa-miR-1257 0 1 1
chr9:94197732|94197906 hsa-miR-1825 0 0 1
chr9:94197732|94197906 hsa-miR-199a-5p 0 0 1
chr9:94197732|94197906 hsa-miR-508-5p 0 0 1
chr9:94197732|94197906 hsa-miR-199b-5p 0 0 1
chr9:94197732|94197906 hsa-miR-16 0 0 1
chr9:94197732|94197906 hsa-miR-138 0 0 1
chr9:94197732|94197906 hsa-miR-634 1 0 0
chr9:94197732|94197906 hsa-miR-645 0 1 0
chr9:94197732|94197906 hsa-miR-4683 0 1 0
chr9:94197732|94197906 hsa-miR-5787 1 0 0
chr9:94197732|94197906 hsa-miR-7974 1 0 0
chr9:94197732|94197906 hsa-miR-12115 0 1 0
chr9:94197732|94197906 hsa-miR-138-5p 0 1 0
chr9:94197732|94197906 hsa-miR-3194-3p 1 1 0
chr9:94197732|94197906 hsa-miR-4768-3p 0 1 0
chr9:94197732|94197906 hsa-miR-3677-5p 1 0 0
chr9:94197732|94197906 hsa-miR-6874-5p 0 1 0
chr9:94197732|94197906 hsa-miR-6728-3p 0 1 0
chr9:94197732|94197906 hsa-miR-6772-3p 1 0 0
chr9:94197732|94197906 hsa-miR-6786-3p 0 1 0
chr9:94197732|94197906 hsa-miR-2276-3p 0 1 0
chr9:94197732|94197906 hsa-miR-5089-5p 0 1 0
chr9:94197732|94197906 hsa-miR-1296-3p 0 1 0
chr9:94197732|94197906 hsa-miR-4524a-3p 1 0 0
chr9:94197732|94197906 hsa-miR-624-5p 0 1 0
chr9:94197732|94197906 hsa-miR-1287-3p 0 1 0
chr9:94197732|94197906 hsa-miR-6808-3p 1 1 0
chr9:94197732|94197906 hsa-miR-6763-5p 0 1 0
chr9:94197732|94197906 hsa-miR-3127-3p 0 1 0
chr9:94197732|94197906 hsa-miR-4667-5p 0 1 0
chr9:94197732|94197906 hsa-miR-6805-3p 0 1 0
chr9:94197732|94197906 hsa-miR-6500-5p 1 1 0
chr9:94197732|94197906 hsa-miR-6838-5p 0 1 0
chr9:94197732|94197906 hsa-miR-3064-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:94197732|94197906
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MLLGQLRTGHITGSLADTPQHQPGVWQLH
Nucleotide Sequence TTGCTGCTGGGACAATTAAGGACTGGTCACATCACTGGATCTCTTGCAGACACTCCCCAGCACCAGCCTGGAGTGTGGCAGCTCCACTAG
CircID chr9:94197732|94197906
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MVTSLDLLQTLPSTSLECGSSTRWLDAAEQQHSQWSVS
Nucleotide Sequence CTGGTCACATCACTGGATCTCTTGCAGACACTCCCCAGCACCAGCCTGGAGTGTGGCAGCTCCACTAGGTGGCTAGACGCAGCAGAGCAGCAGCATTCACAGTGGTCTGTTTCTTAG
CircID chr9:94197732|94197906
ORF Type ORF3
Protein Length 34
Nucleotide Length 105
Protein Sequence MVLAAGTIKDWSHHWISCRHSPAPAWSVAAPLGG
Nucleotide Sequence TTGGTACTTGCTGCTGGGACAATTAAGGACTGGTCACATCACTGGATCTCTTGCAGACACTCCCCAGCACCAGCCTGGAGTGTGGCAGCTCCACTAGGTGGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab