CircRNA Information

General Information
circRNA Basic Information
CircID chr9:96320909|96321129
Strand -
CircType exon
Host Gene ENSG00000130958.10;
Algorism CIRI2;
Sequence CATTACATCAACCTCCTCCCCAGCACACAGCACAGAGATGCCACGAAGGCCCCATAGGTCCCTAGAAGAGCAGCTGGGGCTCCACCTACCGAGTCCCAGTGGCTTATTTTGAAAAGATTTGCTTTCCACAGGTAAGGTGTCGCCCGAGTACATTTCTTGAGACTGCCATTGGCTCATCCTGCATATGAGGTAGTTCTCTTTGCATTTTGCAGATGCTCTCA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:96320909|96321129 hsa-miR-34a-5p 0 0 1
chr9:96320909|96321129 hsa-miR-34a-3p 0 0 1
chr9:96320909|96321129 hsa-miR-146a-5p 0 0 1
chr9:96320909|96321129 hsa-miR-146a-3p 0 0 1
chr9:96320909|96321129 hsa-miR-380-5p 0 0 1
chr9:96320909|96321129 hsa-miR-380-3p 0 0 1
chr9:96320909|96321129 hsa-miR-449a 0 0 1
chr9:96320909|96321129 hsa-miR-527 0 1 1
chr9:96320909|96321129 hsa-miR-607 0 0 1
chr9:96320909|96321129 hsa-miR-449b-5p 0 0 1
chr9:96320909|96321129 hsa-miR-449b-3p 0 0 1
chr9:96320909|96321129 hsa-miR-765 0 0 1
chr9:96320909|96321129 hsa-miR-939-5p 0 0 1
chr9:96320909|96321129 hsa-miR-939-3p 0 0 1
chr9:96320909|96321129 hsa-miR-1204 0 0 1
chr9:96320909|96321129 hsa-miR-1286 0 0 1
chr9:96320909|96321129 hsa-miR-1305 0 0 1
chr9:96320909|96321129 hsa-miR-1255a 0 1 1
chr9:96320909|96321129 hsa-miR-513c-5p 0 0 1
chr9:96320909|96321129 hsa-miR-513c-3p 0 0 1
chr9:96320909|96321129 hsa-miR-1225-3p 0 0 1
chr9:96320909|96321129 hsa-miR-34c-5p 0 0 1
chr9:96320909|96321129 hsa-miR-146b-5p 0 0 1
chr9:96320909|96321129 hsa-miR-518a-5p 0 1 1
chr9:96320909|96321129 hsa-miR-1255b 0 0 1
chr9:96320909|96321129 hsa-miR-1273 0 0 1
chr9:96320909|96321129 hsa-miR-602 1 0 0
chr9:96320909|96321129 hsa-miR-762 1 0 0
chr9:96320909|96321129 hsa-miR-1182 1 0 0
chr9:96320909|96321129 hsa-miR-3138 1 0 0
chr9:96320909|96321129 hsa-miR-3147 1 0 0
chr9:96320909|96321129 hsa-miR-3153 1 0 0
chr9:96320909|96321129 hsa-miR-1587 1 0 0
chr9:96320909|96321129 hsa-miR-3978 0 1 0
chr9:96320909|96321129 hsa-miR-4698 0 1 0
chr9:96320909|96321129 hsa-miR-5787 1 0 0
chr9:96320909|96321129 hsa-miR-8089 1 1 0
chr9:96320909|96321129 hsa-miR-128-1-5p 1 0 0
chr9:96320909|96321129 hsa-miR-7155-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3150a-3p 1 0 0
chr9:96320909|96321129 hsa-miR-6861-5p 1 1 0
chr9:96320909|96321129 hsa-miR-7106-5p 0 1 0
chr9:96320909|96321129 hsa-miR-6807-5p 0 1 0
chr9:96320909|96321129 hsa-miR-6741-5p 1 0 0
chr9:96320909|96321129 hsa-miR-6727-5p 1 0 0
chr9:96320909|96321129 hsa-miR-512-3p 1 0 0
chr9:96320909|96321129 hsa-miR-7845-5p 1 0 0
chr9:96320909|96321129 hsa-miR-6796-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3190-3p 1 0 0
chr9:96320909|96321129 hsa-miR-6810-5p 1 0 0
chr9:96320909|96321129 hsa-miR-6786-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3677-3p 1 0 0
chr9:96320909|96321129 hsa-miR-6834-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3616-3p 1 1 0
chr9:96320909|96321129 hsa-miR-6789-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3162-5p 1 0 0
chr9:96320909|96321129 hsa-miR-891a-3p 1 0 0
chr9:96320909|96321129 hsa-miR-3675-5p 0 1 0
chr9:96320909|96321129 hsa-miR-222-3p 1 0 0
chr9:96320909|96321129 hsa-miR-1468-3p 0 1 0
chr9:96320909|96321129 hsa-miR-5580-3p 0 1 0
chr9:96320909|96321129 hsa-miR-6775-5p 1 0 0
chr9:96320909|96321129 hsa-miR-6819-5p 1 0 0
chr9:96320909|96321129 hsa-miR-6751-5p 1 0 0
chr9:96320909|96321129 hsa-miR-7111-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3620-5p 1 0 0
chr9:96320909|96321129 hsa-miR-4725-3p 1 0 0
chr9:96320909|96321129 hsa-miR-6885-5p 1 0 0
chr9:96320909|96321129 hsa-miR-365a-5p 1 0 0
chr9:96320909|96321129 hsa-miR-365b-5p 1 0 0
chr9:96320909|96321129 hsa-miR-3940-5p 1 0 0
chr9:96320909|96321129 hsa-miR-4700-5p 1 1 0
chr9:96320909|96321129 hsa-miR-6785-5p 0 1 0
chr9:96320909|96321129 hsa-miR-4667-5p 0 1 0
chr9:96320909|96321129 hsa-miR-6762-5p 1 0 0
chr9:96320909|96321129 hsa-miR-769-3p 1 0 0
chr9:96320909|96321129 hsa-miR-4757-5p 1 0 0
chr9:96320909|96321129 hsa-miR-1255b-5p 0 1 0
chr9:96320909|96321129 hsa-miR-7153-5p 0 1 0
chr9:96320909|96321129 hsa-miR-7157-3p 1 0 0
chr9:96320909|96321129 hsa-miR-452-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:96320909|96321129
ORF Type ORF1
Protein Length 42
Nucleotide Length 129
Protein Sequence MWKANLFKISHWDSVGGAPAALLGTYGAFVASLCCVLGRRLM
Nucleotide Sequence CTGTGGAAAGCAAATCTTTTCAAAATAAGCCACTGGGACTCGGTAGGTGGAGCCCCAGCTGCTCTTCTAGGGACCTATGGGGCCTTCGTGGCATCTCTGTGCTGTGTGCTGGGGAGGAGGTTGATGTAA
CircID chr9:96320909|96321129
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MQRELPHMQDEPMAVSRNVLGRHLTCGKQIFSK
Nucleotide Sequence ATGCAAAGAGAACTACCTCATATGCAGGATGAGCCAATGGCAGTCTCAAGAAATGTACTCGGGCGACACCTTACCTGTGGAAAGCAAATCTTTTCAAAATAA
CircID chr9:96320909|96321129
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MSQWQSQEMYSGDTLPVESKSFQNKPLGLGRWSPSCSSRDLWGLRGISVLCAGEEVDVM
Nucleotide Sequence ATGAGCCAATGGCAGTCTCAAGAAATGTACTCGGGCGACACCTTACCTGTGGAAAGCAAATCTTTTCAAAATAAGCCACTGGGACTCGGTAGGTGGAGCCCCAGCTGCTCTTCTAGGGACCTATGGGGCCTTCGTGGCATCTCTGTGCTGTGTGCTGGGGAGGAGGTTGATGTAATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab