CircRNA Information

General Information
circRNA Basic Information
CircID chr9:96488110|96488268
Strand +
CircType exon
Host Gene ENSG00000130956.12;
Algorism CIRI2;
Sequence TTCTGCTCTGGGTCCATAGTTCTCTGCCCTCCTGATCCTTCCCCGGCCTCCCCGGGTGCCTCCTCTGGCTCCACGCCCAGGACGAGGGAGGTTACCAAAATTAATCTCCAGCTGGGATGTGATGTCATTGGCGGGTTTCCGGAAAACATGGGAATCGTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:96488110|96488268 hsa-miR-146a-5p 0 0 1
chr9:96488110|96488268 hsa-miR-146a-3p 0 0 1
chr9:96488110|96488268 hsa-miR-489-5p 0 0 1
chr9:96488110|96488268 hsa-miR-489-3p 0 0 1
chr9:96488110|96488268 hsa-miR-585-5p 0 0 1
chr9:96488110|96488268 hsa-miR-585-3p 0 0 1
chr9:96488110|96488268 hsa-miR-620 0 0 1
chr9:96488110|96488268 hsa-miR-650 0 0 1
chr9:96488110|96488268 hsa-miR-1180-5p 0 0 1
chr9:96488110|96488268 hsa-miR-1180-3p 0 0 1
chr9:96488110|96488268 hsa-miR-1270 0 0 1
chr9:96488110|96488268 hsa-miR-1207-3p 0 0 1
chr9:96488110|96488268 hsa-miR-146b-5p 0 0 1
chr9:96488110|96488268 hsa-miR-590-3p 0 0 1
chr9:96488110|96488268 hsa-miR-1268 0 0 1
chr9:96488110|96488268 hsa-miR-499-3p 0 0 1
chr9:96488110|96488268 hsa-miR-184 1 0 0
chr9:96488110|96488268 hsa-miR-762 1 0 0
chr9:96488110|96488268 hsa-miR-665 1 0 0
chr9:96488110|96488268 hsa-miR-1268a 1 1 0
chr9:96488110|96488268 hsa-miR-711 0 1 0
chr9:96488110|96488268 hsa-miR-3131 1 0 0
chr9:96488110|96488268 hsa-miR-3132 1 1 0
chr9:96488110|96488268 hsa-miR-3141 1 0 0
chr9:96488110|96488268 hsa-miR-3175 1 0 0
chr9:96488110|96488268 hsa-miR-3196 1 0 0
chr9:96488110|96488268 hsa-miR-4271 1 1 0
chr9:96488110|96488268 hsa-miR-3612 0 1 0
chr9:96488110|96488268 hsa-miR-3911 1 1 0
chr9:96488110|96488268 hsa-miR-3919 1 1 0
chr9:96488110|96488268 hsa-miR-1268b 1 1 0
chr9:96488110|96488268 hsa-miR-378g 1 1 0
chr9:96488110|96488268 hsa-miR-4476 1 0 0
chr9:96488110|96488268 hsa-miR-4505 1 0 0
chr9:96488110|96488268 hsa-miR-2392 1 0 0
chr9:96488110|96488268 hsa-miR-4516 1 0 0
chr9:96488110|96488268 hsa-miR-4533 1 0 0
chr9:96488110|96488268 hsa-miR-4651 1 0 0
chr9:96488110|96488268 hsa-miR-4654 1 0 0
chr9:96488110|96488268 hsa-miR-4656 1 0 0
chr9:96488110|96488268 hsa-miR-4688 1 0 0
chr9:96488110|96488268 hsa-miR-4739 1 0 0
chr9:96488110|96488268 hsa-miR-4779 0 1 0
chr9:96488110|96488268 hsa-miR-5090 1 0 0
chr9:96488110|96488268 hsa-miR-5100 1 0 0
chr9:96488110|96488268 hsa-miR-5698 1 0 0
chr9:96488110|96488268 hsa-miR-5787 1 0 0
chr9:96488110|96488268 hsa-miR-6090 1 0 0
chr9:96488110|96488268 hsa-miR-6165 1 0 0
chr9:96488110|96488268 hsa-miR-8089 1 0 0
chr9:96488110|96488268 hsa-miR-12115 1 1 0
chr9:96488110|96488268 hsa-miR-7106-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6825-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6894-5p 1 0 0
chr9:96488110|96488268 hsa-miR-25-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4768-3p 1 0 0
chr9:96488110|96488268 hsa-miR-6089 1 1 0
chr9:96488110|96488268 hsa-miR-6880-5p 1 0 0
chr9:96488110|96488268 hsa-miR-7847-3p 1 0 0
chr9:96488110|96488268 hsa-miR-4695-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4722-5p 1 0 0
chr9:96488110|96488268 hsa-miR-505-5p 0 1 0
chr9:96488110|96488268 hsa-miR-6727-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6721-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4655-5p 1 0 0
chr9:96488110|96488268 hsa-miR-197-5p 1 0 0
chr9:96488110|96488268 hsa-miR-7845-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4655-3p 1 0 0
chr9:96488110|96488268 hsa-miR-3190-3p 1 0 0
chr9:96488110|96488268 hsa-miR-6798-5p 1 0 0
chr9:96488110|96488268 hsa-miR-486-3p 1 0 0
chr9:96488110|96488268 hsa-miR-2467-3p 1 0 0
chr9:96488110|96488268 hsa-miR-6786-5p 1 0 0
chr9:96488110|96488268 hsa-miR-5088-5p 1 0 0
chr9:96488110|96488268 hsa-miR-1226-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6784-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4640-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6771-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6847-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4743-5p 1 0 0
chr9:96488110|96488268 hsa-miR-149-3p 1 1 0
chr9:96488110|96488268 hsa-miR-6824-5p 1 0 0
chr9:96488110|96488268 hsa-miR-3925-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6781-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6895-5p 1 0 0
chr9:96488110|96488268 hsa-miR-423-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4661-3p 1 0 0
chr9:96488110|96488268 hsa-miR-541-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6503-3p 1 0 0
chr9:96488110|96488268 hsa-miR-1207-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4763-3p 1 0 0
chr9:96488110|96488268 hsa-miR-6778-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6816-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6870-5p 1 0 0
chr9:96488110|96488268 hsa-miR-1343-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6743-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6754-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6756-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6769a-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6803-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6851-5p 1 0 0
chr9:96488110|96488268 hsa-miR-7107-5p 1 0 0
chr9:96488110|96488268 hsa-miR-1249-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6763-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6774-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6779-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6797-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6808-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6875-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6879-5p 1 1 0
chr9:96488110|96488268 hsa-miR-7111-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4728-5p 1 0 0
chr9:96488110|96488268 hsa-miR-5196-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6780b-5p 1 1 0
chr9:96488110|96488268 hsa-miR-1237-5p 1 0 0
chr9:96488110|96488268 hsa-miR-328-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4632-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4649-5p 1 0 0
chr9:96488110|96488268 hsa-miR-4725-3p 1 1 0
chr9:96488110|96488268 hsa-miR-4726-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4745-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6729-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6735-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6777-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6795-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6846-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6848-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6858-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6883-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6887-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6889-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4436b-3p 1 1 0
chr9:96488110|96488268 hsa-miR-4723-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6845-5p 1 0 0
chr9:96488110|96488268 hsa-miR-939-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6731-5p 1 0 0
chr9:96488110|96488268 hsa-miR-7843-5p 1 1 0
chr9:96488110|96488268 hsa-miR-4747-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6876-5p 1 0 0
chr9:96488110|96488268 hsa-miR-541-3p 1 0 0
chr9:96488110|96488268 hsa-miR-6750-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6785-5p 1 1 0
chr9:96488110|96488268 hsa-miR-6791-5p 1 0 0
chr9:96488110|96488268 hsa-miR-6529-5p 1 0 0
chr9:96488110|96488268 hsa-miR-383-5p 1 0 0
chr9:96488110|96488268 hsa-miR-549a-3p 1 0 0
chr9:96488110|96488268 hsa-miR-1912-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:96488110|96488268
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MILPRPPRVPPLAPRPGRGRLPKLISSWDVMSLAGFRKTWES
Nucleotide Sequence CTGATCCTTCCCCGGCCTCCCCGGGTGCCTCCTCTGGCTCCACGCCCAGGACGAGGGAGGTTACCAAAATTAATCTCCAGCTGGGATGTGATGTCATTGGCGGGTTTCCGGAAAACATGGGAATCG
CircID chr9:96488110|96488268
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MEINFGNLPRPGRGARGGTRGGRGRIRRAENYGPRAE
Nucleotide Sequence CTGGAGATTAATTTTGGTAACCTCCCTCGTCCTGGGCGTGGAGCCAGAGGAGGCACCCGGGGAGGCCGGGGAAGGATCAGGAGGGCAGAGAACTATGGACCCAGAGCAGAA
CircID chr9:96488110|96488268
ORF Type ORF3
Protein Length 49
Nucleotide Length 147
Protein Sequence MFSGNPPMTSHPSWRLILVTSLVLGVEPEEAPGEAGEGSGGQRTMDPEQ
Nucleotide Sequence ATGTTTTCCGGAAACCCGCCAATGACATCACATCCCAGCTGGAGATTAATTTTGGTAACCTCCCTCGTCCTGGGCGTGGAGCCAGAGGAGGCACCCGGGGAGGCCGGGGAAGGATCAGGAGGGCAGAGAACTATGGACCCAGAGCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab