CircRNA Information

General Information
circRNA Basic Information
CircID chr9:96889962|96890234
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence ACCCTCTGTCATGGGCATCTGCTGCTCTTGCCTCCCTGGTGAAGCCGTCCTGGTTTTCTTGTGGAACATCATCCTTCACATAGCAATCCATGTGCTGTGGCTGGGCTGACCATCCTCCACATCCCGAGGCAGGCGTGTGACCCAGGCAGGGCCAAGTAGCACCAGCCTGGCACTTTCCTCCAAGGAGGATACAGGGATGAGCCTGGCGGGGGGTGTGTGCAACGCAGAGGACAGCAGGTCCCGCAGGGGAAGAGATGAAGTGCTGATGACGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:96889962|96890234 hsa-miR-15a-5p 0 0 1
chr9:96889962|96890234 hsa-miR-15a-3p 0 0 1
chr9:96889962|96890234 hsa-miR-17-5p 0 0 1
chr9:96889962|96890234 hsa-miR-17-3p 0 0 1
chr9:96889962|96890234 hsa-miR-20a-5p 0 0 1
chr9:96889962|96890234 hsa-miR-20a-3p 0 0 1
chr9:96889962|96890234 hsa-miR-31-5p 0 0 1
chr9:96889962|96890234 hsa-miR-31-3p 0 0 1
chr9:96889962|96890234 hsa-miR-93-5p 0 0 1
chr9:96889962|96890234 hsa-miR-93-3p 0 0 1
chr9:96889962|96890234 hsa-miR-106a-5p 0 0 1
chr9:96889962|96890234 hsa-miR-106a-3p 0 0 1
chr9:96889962|96890234 hsa-miR-197-5p 0 0 1
chr9:96889962|96890234 hsa-miR-197-3p 0 0 1
chr9:96889962|96890234 hsa-miR-15b-5p 0 0 1
chr9:96889962|96890234 hsa-miR-15b-3p 0 0 1
chr9:96889962|96890234 hsa-miR-195-5p 0 0 1
chr9:96889962|96890234 hsa-miR-195-3p 0 0 1
chr9:96889962|96890234 hsa-miR-106b-5p 0 0 1
chr9:96889962|96890234 hsa-miR-106b-3p 0 0 1
chr9:96889962|96890234 hsa-miR-370-5p 0 0 1
chr9:96889962|96890234 hsa-miR-370-3p 0 0 1
chr9:96889962|96890234 hsa-miR-328-5p 0 0 1
chr9:96889962|96890234 hsa-miR-328-3p 0 0 1
chr9:96889962|96890234 hsa-miR-335-5p 0 0 1
chr9:96889962|96890234 hsa-miR-335-3p 0 0 1
chr9:96889962|96890234 hsa-miR-424-5p 0 0 1
chr9:96889962|96890234 hsa-miR-424-3p 0 0 1
chr9:96889962|96890234 hsa-miR-20b-5p 0 0 1
chr9:96889962|96890234 hsa-miR-20b-3p 0 0 1
chr9:96889962|96890234 hsa-miR-412-5p 0 0 1
chr9:96889962|96890234 hsa-miR-412-3p 0 0 1
chr9:96889962|96890234 hsa-miR-484 0 1 1
chr9:96889962|96890234 hsa-miR-492 0 0 1
chr9:96889962|96890234 hsa-miR-432-5p 0 0 1
chr9:96889962|96890234 hsa-miR-432-3p 0 0 1
chr9:96889962|96890234 hsa-miR-497-5p 0 0 1
chr9:96889962|96890234 hsa-miR-497-3p 0 0 1
chr9:96889962|96890234 hsa-miR-519d-5p 0 0 1
chr9:96889962|96890234 hsa-miR-519d-3p 0 0 1
chr9:96889962|96890234 hsa-miR-626 0 0 1
chr9:96889962|96890234 hsa-miR-650 0 0 1
chr9:96889962|96890234 hsa-miR-661 1 1 1
chr9:96889962|96890234 hsa-miR-765 0 0 1
chr9:96889962|96890234 hsa-miR-890 0 0 1
chr9:96889962|96890234 hsa-miR-922 0 0 1
chr9:96889962|96890234 hsa-miR-1226-5p 0 0 1
chr9:96889962|96890234 hsa-miR-1226-3p 0 0 1
chr9:96889962|96890234 hsa-miR-1236-5p 0 0 1
chr9:96889962|96890234 hsa-miR-1236-3p 0 0 1
chr9:96889962|96890234 hsa-miR-1291 0 1 1
chr9:96889962|96890234 hsa-miR-1246 0 0 1
chr9:96889962|96890234 hsa-miR-1252-5p 0 0 1
chr9:96889962|96890234 hsa-miR-1252-3p 0 0 1
chr9:96889962|96890234 hsa-miR-1321 0 0 1
chr9:96889962|96890234 hsa-miR-339-5p 0 0 1
chr9:96889962|96890234 hsa-miR-490-5p 0 0 1
chr9:96889962|96890234 hsa-miR-331-3p 0 0 1
chr9:96889962|96890234 hsa-miR-362-3p 0 1 1
chr9:96889962|96890234 hsa-miR-1274a 0 0 1
chr9:96889962|96890234 hsa-miR-1274b 0 0 1
chr9:96889962|96890234 hsa-miR-16 0 0 1
chr9:96889962|96890234 hsa-miR-138 0 0 1
chr9:96889962|96890234 hsa-miR-1254 0 0 1
chr9:96889962|96890234 hsa-miR-768-5p 0 0 1
chr9:96889962|96890234 hsa-miR-329 0 0 1
chr9:96889962|96890234 hsa-miR-346 1 0 0
chr9:96889962|96890234 hsa-miR-623 1 1 0
chr9:96889962|96890234 hsa-miR-645 0 1 0
chr9:96889962|96890234 hsa-miR-1470 1 0 0
chr9:96889962|96890234 hsa-miR-2278 0 1 0
chr9:96889962|96890234 hsa-miR-1193 0 1 0
chr9:96889962|96890234 hsa-miR-3196 1 0 0
chr9:96889962|96890234 hsa-miR-4270 1 1 0
chr9:96889962|96890234 hsa-miR-3649 0 1 0
chr9:96889962|96890234 hsa-miR-4491 0 1 0
chr9:96889962|96890234 hsa-miR-4497 1 0 0
chr9:96889962|96890234 hsa-miR-4657 0 1 0
chr9:96889962|96890234 hsa-miR-4706 1 0 0
chr9:96889962|96890234 hsa-miR-4734 1 1 0
chr9:96889962|96890234 hsa-miR-4739 1 1 0
chr9:96889962|96890234 hsa-miR-4801 0 1 0
chr9:96889962|96890234 hsa-miR-5685 0 1 0
chr9:96889962|96890234 hsa-miR-12128 1 0 0
chr9:96889962|96890234 hsa-miR-668-3p 1 0 0
chr9:96889962|96890234 hsa-miR-6747-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6836-3p 1 0 0
chr9:96889962|96890234 hsa-miR-6825-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6894-5p 1 1 0
chr9:96889962|96890234 hsa-miR-766-5p 0 1 0
chr9:96889962|96890234 hsa-miR-6089 1 0 0
chr9:96889962|96890234 hsa-miR-3192-5p 1 0 0
chr9:96889962|96890234 hsa-miR-4695-5p 1 0 0
chr9:96889962|96890234 hsa-miR-4755-3p 0 1 0
chr9:96889962|96890234 hsa-miR-4655-5p 1 0 0
chr9:96889962|96890234 hsa-miR-3605-5p 0 1 0
chr9:96889962|96890234 hsa-miR-6888-5p 1 0 0
chr9:96889962|96890234 hsa-miR-4763-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6753-5p 1 1 0
chr9:96889962|96890234 hsa-miR-4691-3p 0 1 0
chr9:96889962|96890234 hsa-miR-4764-5p 0 1 0
chr9:96889962|96890234 hsa-miR-7113-3p 1 0 0
chr9:96889962|96890234 hsa-miR-4717-3p 0 1 0
chr9:96889962|96890234 hsa-miR-6742-3p 0 1 0
chr9:96889962|96890234 hsa-miR-6870-3p 0 1 0
chr9:96889962|96890234 hsa-miR-4742-3p 0 1 0
chr9:96889962|96890234 hsa-miR-6804-3p 1 0 0
chr9:96889962|96890234 hsa-miR-7113-5p 0 1 0
chr9:96889962|96890234 hsa-miR-130b-5p 1 1 0
chr9:96889962|96890234 hsa-miR-3173-5p 0 1 0
chr9:96889962|96890234 hsa-miR-3177-5p 1 0 0
chr9:96889962|96890234 hsa-miR-3617-3p 1 1 0
chr9:96889962|96890234 hsa-miR-598-3p 1 0 0
chr9:96889962|96890234 hsa-miR-5089-3p 0 1 0
chr9:96889962|96890234 hsa-miR-1207-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6752-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6754-5p 1 1 0
chr9:96889962|96890234 hsa-miR-6780a-5p 0 1 0
chr9:96889962|96890234 hsa-miR-7111-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6754-3p 1 0 0
chr9:96889962|96890234 hsa-miR-4728-5p 1 0 0
chr9:96889962|96890234 hsa-miR-4632-5p 1 0 0
chr9:96889962|96890234 hsa-miR-4685-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6777-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6845-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6885-5p 1 0 0
chr9:96889962|96890234 hsa-miR-6799-3p 0 1 0
chr9:96889962|96890234 hsa-miR-6876-5p 0 1 0
chr9:96889962|96890234 hsa-miR-4722-3p 0 1 0
chr9:96889962|96890234 hsa-miR-6893-3p 1 1 0
chr9:96889962|96890234 hsa-miR-6801-3p 1 1 0
chr9:96889962|96890234 hsa-miR-6805-3p 1 0 0
chr9:96889962|96890234 hsa-miR-6810-3p 1 0 0
chr9:96889962|96890234 hsa-miR-4690-3p 0 1 0
chr9:96889962|96890234 hsa-miR-6838-5p 0 1 0
chr9:96889962|96890234 hsa-miR-494-5p 1 0 0
chr9:96889962|96890234 hsa-miR-549a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:96889962|96890234
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MGICCSCLPGEAVLVFLWNIILHIAIHVLWLG
Nucleotide Sequence ATGGGCATCTGCTGCTCTTGCCTCCCTGGTGAAGCCGTCCTGGTTTTCTTGTGGAACATCATCCTTCACATAGCAATCCATGTGCTGTGGCTGGGCTGA
CircID chr9:96889962|96890234
ORF Type ORF2
Protein Length 35
Nucleotide Length 105
Protein Sequence MALSSKEDTGMSLAGGVCNAEDSRSRRGRDEVLMT
Nucleotide Sequence CTGGCACTTTCCTCCAAGGAGGATACAGGGATGAGCCTGGCGGGGGGTGTGTGCAACGCAGAGGACAGCAGGTCCCGCAGGGGAAGAGATGAAGTGCTGATGACG
CircID chr9:96889962|96890234
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MSWASAALASLVKPSWFSCGTSSFT
Nucleotide Sequence CTGTCATGGGCATCTGCTGCTCTTGCCTCCCTGGTGAAGCCGTCCTGGTTTTCTTGTGGAACATCATCCTTCACATAG
CircID chr9:96889962|96890234
ORF Type ORF4
Protein Length 56
Nucleotide Length 171
Protein Sequence MRDLLSSALHTPPARLIPVSSLEESARLVLLGPAWVTRLPRDVEDGQPSHSTWIAM
Nucleotide Sequence CTGCGGGACCTGCTGTCCTCTGCGTTGCACACACCCCCCGCCAGGCTCATCCCTGTATCCTCCTTGGAGGAAAGTGCCAGGCTGGTGCTACTTGGCCCTGCCTGGGTCACACGCCTGCCTCGGGATGTGGAGGATGGTCAGCCCAGCCACAGCACATGGATTGCTATGTGA
CircID chr9:96889962|96890234
ORF Type ORF5
Protein Length 52
Nucleotide Length 159
Protein Sequence MRCTHPPPGSSLYPPWRKVPGWCYLALPGSHACLGMWRMVSPATAHGLLCEG
Nucleotide Sequence CTGCGTTGCACACACCCCCCGCCAGGCTCATCCCTGTATCCTCCTTGGAGGAAAGTGCCAGGCTGGTGCTACTTGGCCCTGCCTGGGTCACACGCCTGCCTCGGGATGTGGAGGATGGTCAGCCCAGCCACAGCACATGGATTGCTATGTGAAGGATGA
CircID chr9:96889962|96890234
ORF Type ORF6
Protein Length 48
Nucleotide Length 144
Protein Sequence MGHTPASGCGGWSAQPQHMDCYVKDDVPQENQDGFTREARAADAHDRG
Nucleotide Sequence CTGGGTCACACGCCTGCCTCGGGATGTGGAGGATGGTCAGCCCAGCCACAGCACATGGATTGCTATGTGAAGGATGATGTTCCACAAGAAAACCAGGACGGCTTCACCAGGGAGGCAAGAGCAGCAGATGCCCATGACAGAGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab