CircRNA Information

General Information
circRNA Basic Information
CircID chr9:96894809|96894972
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CCTCAAACTCCTGGGCTCAAGAGACCCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATATGCACCATCATACCTGGCTAATTTTAAAAATTTTTATAGAGGCAAGGTCTTGCTACGTTGCCCAAGCAGGCTTCAAACTCCTGAGCTCAAGCGATTCTCCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:96894809|96894972 hsa-miR-448 0 0 1
chr9:96894809|96894972 hsa-miR-526b-5p 0 0 1
chr9:96894809|96894972 hsa-miR-526b-3p 0 0 1
chr9:96894809|96894972 hsa-miR-510-5p 0 0 1
chr9:96894809|96894972 hsa-miR-510-3p 0 0 1
chr9:96894809|96894972 hsa-miR-575 0 0 1
chr9:96894809|96894972 hsa-miR-596 0 0 1
chr9:96894809|96894972 hsa-miR-635 0 1 1
chr9:96894809|96894972 hsa-miR-665 1 1 1
chr9:96894809|96894972 hsa-miR-940 0 0 1
chr9:96894809|96894972 hsa-miR-1182 0 1 1
chr9:96894809|96894972 hsa-miR-1304-5p 0 0 1
chr9:96894809|96894972 hsa-miR-1304-3p 0 0 1
chr9:96894809|96894972 hsa-miR-1272 0 0 1
chr9:96894809|96894972 hsa-miR-1322 0 0 1
chr9:96894809|96894972 hsa-miR-1827 0 0 1
chr9:96894809|96894972 hsa-miR-127-5p 0 0 1
chr9:96894809|96894972 hsa-miR-512-5p 0 0 1
chr9:96894809|96894972 hsa-miR-1225-3p 0 0 1
chr9:96894809|96894972 hsa-miR-485-5p 0 0 1
chr9:96894809|96894972 hsa-miR-548c-3p 0 0 1
chr9:96894809|96894972 hsa-miR-1233 0 0 1
chr9:96894809|96894972 hsa-miR-3929 0 1 0
chr9:96894809|96894972 hsa-miR-3937 1 0 0
chr9:96894809|96894972 hsa-miR-4478 0 1 0
chr9:96894809|96894972 hsa-miR-4647 1 0 0
chr9:96894809|96894972 hsa-miR-4656 1 1 0
chr9:96894809|96894972 hsa-miR-4674 1 0 0
chr9:96894809|96894972 hsa-miR-4739 1 0 0
chr9:96894809|96894972 hsa-miR-5787 1 0 0
chr9:96894809|96894972 hsa-miR-6133 1 0 0
chr9:96894809|96894972 hsa-miR-6165 1 0 0
chr9:96894809|96894972 hsa-miR-6840-3p 0 1 0
chr9:96894809|96894972 hsa-miR-4433a-3p 0 1 0
chr9:96894809|96894972 hsa-miR-6765-5p 1 0 0
chr9:96894809|96894972 hsa-miR-7106-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6894-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6854-5p 1 1 0
chr9:96894809|96894972 hsa-miR-3934-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6089 1 0 0
chr9:96894809|96894972 hsa-miR-4695-5p 0 1 0
chr9:96894809|96894972 hsa-miR-6746-5p 1 0 0
chr9:96894809|96894972 hsa-miR-4653-3p 1 0 0
chr9:96894809|96894972 hsa-miR-4722-5p 1 1 0
chr9:96894809|96894972 hsa-miR-6798-5p 1 0 0
chr9:96894809|96894972 hsa-miR-2467-3p 1 0 0
chr9:96894809|96894972 hsa-miR-6888-5p 1 0 0
chr9:96894809|96894972 hsa-miR-3934-3p 1 0 0
chr9:96894809|96894972 hsa-miR-5088-5p 1 0 0
chr9:96894809|96894972 hsa-miR-4640-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6771-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6824-5p 1 0 0
chr9:96894809|96894972 hsa-miR-7843-3p 0 1 0
chr9:96894809|96894972 hsa-let-7e-5p 1 1 0
chr9:96894809|96894972 hsa-miR-3664-3p 0 1 0
chr9:96894809|96894972 hsa-miR-1207-5p 1 0 0
chr9:96894809|96894972 hsa-miR-4763-3p 1 0 0
chr9:96894809|96894972 hsa-miR-6893-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6743-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6752-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6756-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6803-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6813-5p 1 0 0
chr9:96894809|96894972 hsa-miR-1249-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6722-3p 1 0 0
chr9:96894809|96894972 hsa-miR-6774-5p 1 1 0
chr9:96894809|96894972 hsa-miR-6797-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6808-5p 0 1 0
chr9:96894809|96894972 hsa-miR-6848-5p 1 0 0
chr9:96894809|96894972 hsa-miR-1285-3p 1 1 0
chr9:96894809|96894972 hsa-miR-6773-5p 0 1 0
chr9:96894809|96894972 hsa-miR-1914-3p 1 0 0
chr9:96894809|96894972 hsa-miR-6855-5p 1 0 0
chr9:96894809|96894972 hsa-miR-6884-5p 0 1 0
chr9:96894809|96894972 hsa-miR-6848-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr9:96894809|96894972
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MSSWDYMHHHTWLILKIFIEARSCYVAQAGFKLLSSSDSP
Nucleotide Sequence CTGAGTAGCTGGGACTATATGCACCATCATACCTGGCTAATTTTAAAAATTTTTATAGAGGCAAGGTCTTGCTACGTTGCCCAAGCAGGCTTCAAACTCCTGAGCTCAAGCGATTCTCCT
CircID chr9:96894809|96894972
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MGLYAPSYLANFKNFYRGKVLLRCPSRLQTPELKRFSY
Nucleotide Sequence CTGGGACTATATGCACCATCATACCTGGCTAATTTTAAAAATTTTTATAGAGGCAAGGTCTTGCTACGTTGCCCAAGCAGGCTTCAAACTCCTGAGCTCAAGCGATTCTCCTAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab