CircRNA Information

General Information
circRNA Basic Information
CircID chr9:98060856|98060961
Strand +
CircType exon
Host Gene ENSG00000095380.10;
Algorism CIRI2;
Sequence CTCCTCGGCGTACCTCTGCAGCTCCCTGTACTGGTCATGGCTGAACTCCAGATGTCGTTTGTGCTCCCCGTACGTCTTCCCCCAGGAATGCTTCGAGGTGTATGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:98060856|98060961 hsa-miR-558 0 0 1
chr9:98060856|98060961 hsa-miR-625-5p 0 0 1
chr9:98060856|98060961 hsa-miR-625-3p 0 0 1
chr9:98060856|98060961 hsa-miR-637 0 0 1
chr9:98060856|98060961 hsa-miR-920 0 1 1
chr9:98060856|98060961 hsa-miR-939-5p 0 0 1
chr9:98060856|98060961 hsa-miR-939-3p 0 0 1
chr9:98060856|98060961 hsa-miR-1179 0 0 1
chr9:98060856|98060961 hsa-miR-1275 0 0 1
chr9:98060856|98060961 hsa-miR-770-5p 0 0 1
chr9:98060856|98060961 hsa-miR-151-5p 0 0 1
chr9:98060856|98060961 hsa-miR-7 0 0 1
chr9:98060856|98060961 hsa-miR-516b 0 0 1
chr9:98060856|98060961 hsa-miR-638 1 0 0
chr9:98060856|98060961 hsa-miR-3175 1 0 0
chr9:98060856|98060961 hsa-miR-4270 0 1 0
chr9:98060856|98060961 hsa-miR-4271 1 0 0
chr9:98060856|98060961 hsa-miR-4706 1 0 0
chr9:98060856|98060961 hsa-miR-4739 1 0 0
chr9:98060856|98060961 hsa-miR-6081 1 0 0
chr9:98060856|98060961 hsa-miR-6090 1 0 0
chr9:98060856|98060961 hsa-miR-6125 1 0 0
chr9:98060856|98060961 hsa-miR-8089 1 0 0
chr9:98060856|98060961 hsa-miR-6734-5p 1 0 0
chr9:98060856|98060961 hsa-miR-3157-5p 1 1 0
chr9:98060856|98060961 hsa-miR-6825-5p 1 0 0
chr9:98060856|98060961 hsa-miR-7847-3p 1 0 0
chr9:98060856|98060961 hsa-miR-23a-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6798-5p 1 0 0
chr9:98060856|98060961 hsa-miR-3158-5p 0 1 0
chr9:98060856|98060961 hsa-miR-1207-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6812-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6870-5p 1 0 0
chr9:98060856|98060961 hsa-miR-1343-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6726-5p 1 1 0
chr9:98060856|98060961 hsa-miR-6803-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6751-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6763-5p 1 0 0
chr9:98060856|98060961 hsa-miR-7111-5p 1 1 0
chr9:98060856|98060961 hsa-miR-5196-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6780b-5p 1 1 0
chr9:98060856|98060961 hsa-miR-328-5p 1 0 0
chr9:98060856|98060961 hsa-miR-4725-3p 1 1 0
chr9:98060856|98060961 hsa-miR-4749-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6729-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6777-5p 1 1 0
chr9:98060856|98060961 hsa-miR-6846-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6848-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6887-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6889-5p 1 1 0
chr9:98060856|98060961 hsa-miR-4723-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6885-5p 1 0 0
chr9:98060856|98060961 hsa-miR-4665-5p 1 1 0
chr9:98060856|98060961 hsa-miR-4716-3p 1 0 0
chr9:98060856|98060961 hsa-miR-541-3p 1 0 0
chr9:98060856|98060961 hsa-miR-4667-5p 1 0 0
chr9:98060856|98060961 hsa-miR-5591-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6791-5p 1 0 0
chr9:98060856|98060961 hsa-miR-6837-5p 1 0 0
chr9:98060856|98060961 hsa-miR-4712-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr9:98060856|98060961
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MQLPVLVMAELQMSFVLPVRLPPGMLRGVW
Nucleotide Sequence CTGCAGCTCCCTGTACTGGTCATGGCTGAACTCCAGATGTCGTTTGTGCTCCCCGTACGTCTTCCCCCAGGAATGCTTCGAGGTGTATGG
CircID chr9:98060856|98060961
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MYWSWLNSRCRLCSPYVFPQECFEVYG
Nucleotide Sequence CTGTACTGGTCATGGCTGAACTCCAGATGTCGTTTGTGCTCCCCGTACGTCTTCCCCCAGGAATGCTTCGAGGTGTATGGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab