CircRNA Information

General Information
circRNA Basic Information
CircID chr9:99973670|99973873
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCACACCCCGCACTTGATCTTCCCCCAACTTTAAGTGACTCAGTTCCTTATATCACTGCCACAAGAATTAACAACCATGTCCATCTTTCATTTTTCTGCTGAAAGATTTTCAGTGGTTCCCACTGAATACCAAATAAAGTTCGAATCCCTTAGATTGGCATTCACAGCCTTCTACGTTCTGGCCCCAGCTTTATCTCTTGAAA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr9:99973670|99973873 hsa-miR-34a-5p 0 0 1
chr9:99973670|99973873 hsa-miR-34a-3p 0 0 1
chr9:99973670|99973873 hsa-miR-214-5p 0 0 1
chr9:99973670|99973873 hsa-miR-214-3p 0 0 1
chr9:99973670|99973873 hsa-miR-320a-5p 0 0 1
chr9:99973670|99973873 hsa-miR-320a-3p 0 0 1
chr9:99973670|99973873 hsa-miR-335-5p 0 0 1
chr9:99973670|99973873 hsa-miR-335-3p 0 0 1
chr9:99973670|99973873 hsa-miR-449a 0 1 1
chr9:99973670|99973873 hsa-miR-498-5p 0 0 1
chr9:99973670|99973873 hsa-miR-498-3p 0 0 1
chr9:99973670|99973873 hsa-miR-561-5p 0 0 1
chr9:99973670|99973873 hsa-miR-561-3p 0 0 1
chr9:99973670|99973873 hsa-miR-569 0 0 1
chr9:99973670|99973873 hsa-miR-577 0 0 1
chr9:99973670|99973873 hsa-miR-578 0 0 1
chr9:99973670|99973873 hsa-miR-581 0 0 1
chr9:99973670|99973873 hsa-miR-625-5p 0 0 1
chr9:99973670|99973873 hsa-miR-625-3p 0 0 1
chr9:99973670|99973873 hsa-miR-449b-5p 0 0 1
chr9:99973670|99973873 hsa-miR-449b-3p 0 0 1
chr9:99973670|99973873 hsa-miR-744-5p 0 0 1
chr9:99973670|99973873 hsa-miR-744-3p 0 0 1
chr9:99973670|99973873 hsa-miR-922 0 1 1
chr9:99973670|99973873 hsa-miR-1257 0 0 1
chr9:99973670|99973873 hsa-miR-1275 0 0 1
chr9:99973670|99973873 hsa-miR-1277-5p 0 0 1
chr9:99973670|99973873 hsa-miR-1277-3p 0 0 1
chr9:99973670|99973873 hsa-miR-1292-5p 0 0 1
chr9:99973670|99973873 hsa-miR-1292-3p 0 0 1
chr9:99973670|99973873 hsa-miR-320b 1 1 1
chr9:99973670|99973873 hsa-miR-320c 0 1 1
chr9:99973670|99973873 hsa-miR-320d 0 1 1
chr9:99973670|99973873 hsa-miR-34c-5p 0 1 1
chr9:99973670|99973873 hsa-miR-453 0 0 1
chr9:99973670|99973873 hsa-miR-606 0 1 0
chr9:99973670|99973873 hsa-miR-2861 1 0 0
chr9:99973670|99973873 hsa-miR-3147 1 0 0
chr9:99973670|99973873 hsa-miR-3175 1 0 0
chr9:99973670|99973873 hsa-miR-320e 0 1 0
chr9:99973670|99973873 hsa-miR-4259 1 1 0
chr9:99973670|99973873 hsa-miR-4271 1 1 0
chr9:99973670|99973873 hsa-miR-4426 0 1 0
chr9:99973670|99973873 hsa-miR-4429 0 1 0
chr9:99973670|99973873 hsa-miR-4505 1 0 0
chr9:99973670|99973873 hsa-miR-2392 1 0 0
chr9:99973670|99973873 hsa-miR-4525 1 0 0
chr9:99973670|99973873 hsa-miR-4662b 0 1 0
chr9:99973670|99973873 hsa-miR-4689 1 0 0
chr9:99973670|99973873 hsa-miR-4739 1 0 0
chr9:99973670|99973873 hsa-miR-4748 1 0 0
chr9:99973670|99973873 hsa-miR-5572 1 0 0
chr9:99973670|99973873 hsa-miR-5698 1 0 0
chr9:99973670|99973873 hsa-miR-5787 1 0 0
chr9:99973670|99973873 hsa-miR-6088 1 1 0
chr9:99973670|99973873 hsa-miR-6133 1 0 0
chr9:99973670|99973873 hsa-miR-6863 1 0 0
chr9:99973670|99973873 hsa-miR-7974 0 1 0
chr9:99973670|99973873 hsa-miR-8085 1 0 0
chr9:99973670|99973873 hsa-miR-12119 1 0 0
chr9:99973670|99973873 hsa-miR-12120 0 1 0
chr9:99973670|99973873 hsa-miR-6734-5p 1 0 0
chr9:99973670|99973873 hsa-miR-4731-5p 1 0 0
chr9:99973670|99973873 hsa-miR-3150a-3p 1 0 0
chr9:99973670|99973873 hsa-miR-7106-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6825-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6894-5p 1 1 0
chr9:99973670|99973873 hsa-miR-1227-5p 1 1 0
chr9:99973670|99973873 hsa-miR-6089 1 0 0
chr9:99973670|99973873 hsa-miR-6730-5p 1 1 0
chr9:99973670|99973873 hsa-miR-4474-3p 1 0 0
chr9:99973670|99973873 hsa-miR-3180-3p 1 0 0
chr9:99973670|99973873 hsa-miR-6827-5p 0 1 0
chr9:99973670|99973873 hsa-miR-6881-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6835-5p 1 0 0
chr9:99973670|99973873 hsa-miR-7109-5p 1 0 0
chr9:99973670|99973873 hsa-miR-4640-5p 0 1 0
chr9:99973670|99973873 hsa-miR-4743-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6781-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6877-5p 1 0 0
chr9:99973670|99973873 hsa-miR-194-3p 0 1 0
chr9:99973670|99973873 hsa-miR-584-5p 1 0 0
chr9:99973670|99973873 hsa-miR-1207-5p 1 0 0
chr9:99973670|99973873 hsa-miR-4763-3p 1 0 0
chr9:99973670|99973873 hsa-miR-6778-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6787-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6812-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6870-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6756-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6803-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6751-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6788-5p 1 0 0
chr9:99973670|99973873 hsa-miR-7111-5p 1 0 0
chr9:99973670|99973873 hsa-miR-5196-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6780b-5p 1 0 0
chr9:99973670|99973873 hsa-miR-1237-5p 1 0 0
chr9:99973670|99973873 hsa-miR-449c-5p 1 0 0
chr9:99973670|99973873 hsa-miR-4725-3p 1 1 0
chr9:99973670|99973873 hsa-miR-4726-5p 1 1 0
chr9:99973670|99973873 hsa-miR-6795-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6887-5p 1 0 0
chr9:99973670|99973873 hsa-miR-4723-5p 1 0 0
chr9:99973670|99973873 hsa-miR-6845-5p 1 1 0
chr9:99973670|99973873 hsa-miR-939-5p 1 0 0
chr9:99973670|99973873 hsa-miR-34b-5p 1 0 0
chr9:99973670|99973873 hsa-miR-4665-5p 1 1 0
chr9:99973670|99973873 hsa-miR-4716-3p 1 0 0
chr9:99973670|99973873 hsa-miR-6762-5p 1 1 0
chr9:99973670|99973873 hsa-miR-323b-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr9:99973670|99973873
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MPQELTTMSIFHFSAERFSVVPTEYQIKFESLRLAFTAFYVLAPALSLE
Nucleotide Sequence CTGCCACAAGAATTAACAACCATGTCCATCTTTCATTTTTCTGCTGAAAGATTTTCAGTGGTTCCCACTGAATACCAAATAAAGTTCGAATCCCTTAGATTGGCATTCACAGCCTTCTACGTTCTGGCCCCAGCTTTATCTCTTGAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab