CircRNA Information

General Information
circRNA Basic Information
CircID chrX:10142414|10142520
Strand +
CircType exon
Host Gene ENSG00000047644.16;
Algorism CIRI2;
Sequence CCGTATGTCCTTCCCTCCCCCAAACAAGCACTTTCAAAGGTGATGGTGTGTATGTCCTAACTGCTGTATTCACCCACGGAGTCAACGAGCGTGGGCATTCCTACTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:10142414|10142520 hsa-miR-17-5p 0 0 1
chrX:10142414|10142520 hsa-miR-17-3p 0 0 1
chrX:10142414|10142520 hsa-miR-20a-5p 0 0 1
chrX:10142414|10142520 hsa-miR-20a-3p 0 0 1
chrX:10142414|10142520 hsa-miR-93-5p 0 0 1
chrX:10142414|10142520 hsa-miR-93-3p 0 0 1
chrX:10142414|10142520 hsa-miR-106a-5p 0 0 1
chrX:10142414|10142520 hsa-miR-106a-3p 0 0 1
chrX:10142414|10142520 hsa-miR-106b-5p 0 0 1
chrX:10142414|10142520 hsa-miR-106b-3p 0 0 1
chrX:10142414|10142520 hsa-miR-302a-5p 0 0 1
chrX:10142414|10142520 hsa-miR-302a-3p 0 0 1
chrX:10142414|10142520 hsa-miR-302b-5p 0 0 1
chrX:10142414|10142520 hsa-miR-302b-3p 0 0 1
chrX:10142414|10142520 hsa-miR-302c-5p 0 0 1
chrX:10142414|10142520 hsa-miR-302c-3p 0 0 1
chrX:10142414|10142520 hsa-miR-302d-5p 0 0 1
chrX:10142414|10142520 hsa-miR-302d-3p 0 0 1
chrX:10142414|10142520 hsa-miR-372-5p 0 0 1
chrX:10142414|10142520 hsa-miR-372-3p 0 0 1
chrX:10142414|10142520 hsa-miR-373-5p 0 0 1
chrX:10142414|10142520 hsa-miR-373-3p 0 0 1
chrX:10142414|10142520 hsa-miR-20b-5p 0 0 1
chrX:10142414|10142520 hsa-miR-20b-3p 0 0 1
chrX:10142414|10142520 hsa-miR-488-5p 0 0 1
chrX:10142414|10142520 hsa-miR-488-3p 0 0 1
chrX:10142414|10142520 hsa-miR-520e-5p 0 0 1
chrX:10142414|10142520 hsa-miR-520e-3p 0 0 1
chrX:10142414|10142520 hsa-miR-520f-5p 0 0 1
chrX:10142414|10142520 hsa-miR-520f-3p 0 0 1
chrX:10142414|10142520 hsa-miR-520b-5p 0 0 1
chrX:10142414|10142520 hsa-miR-520b-3p 0 0 1
chrX:10142414|10142520 hsa-miR-519d-5p 0 0 1
chrX:10142414|10142520 hsa-miR-519d-3p 0 0 1
chrX:10142414|10142520 hsa-miR-603 0 0 1
chrX:10142414|10142520 hsa-miR-625-5p 0 0 1
chrX:10142414|10142520 hsa-miR-625-3p 0 0 1
chrX:10142414|10142520 hsa-miR-636 0 0 1
chrX:10142414|10142520 hsa-miR-1258 0 0 1
chrX:10142414|10142520 hsa-miR-1262 1 1 1
chrX:10142414|10142520 hsa-miR-1275 0 0 1
chrX:10142414|10142520 hsa-miR-302e 0 0 1
chrX:10142414|10142520 hsa-miR-1197 0 0 1
chrX:10142414|10142520 hsa-miR-520d-3p 0 1 1
chrX:10142414|10142520 hsa-miR-520a-3p 0 0 1
chrX:10142414|10142520 hsa-miR-520c-3p 0 0 1
chrX:10142414|10142520 hsa-miR-362-3p 0 0 1
chrX:10142414|10142520 hsa-miR-329 0 0 1
chrX:10142414|10142520 hsa-miR-365 0 0 1
chrX:10142414|10142520 hsa-miR-5698 0 1 0
chrX:10142414|10142520 hsa-miR-12119 1 0 0
chrX:10142414|10142520 hsa-miR-134-3p 1 0 0
chrX:10142414|10142520 hsa-miR-6825-5p 0 1 0
chrX:10142414|10142520 hsa-miR-6884-3p 0 1 0
chrX:10142414|10142520 hsa-miR-7109-5p 1 0 0
chrX:10142414|10142520 hsa-miR-1226-5p 1 0 0
chrX:10142414|10142520 hsa-miR-6740-5p 1 1 0
chrX:10142414|10142520 hsa-miR-1228-5p 1 0 0
chrX:10142414|10142520 hsa-miR-4787-5p 1 0 0
chrX:10142414|10142520 hsa-miR-149-3p 0 1 0
chrX:10142414|10142520 hsa-miR-6824-5p 1 0 0
chrX:10142414|10142520 hsa-miR-1306-3p 1 0 0
chrX:10142414|10142520 hsa-miR-6803-5p 1 0 0
chrX:10142414|10142520 hsa-miR-1249-5p 0 1 0
chrX:10142414|10142520 hsa-miR-6751-5p 1 0 0
chrX:10142414|10142520 hsa-miR-6780a-5p 0 1 0
chrX:10142414|10142520 hsa-miR-6797-5p 0 1 0
chrX:10142414|10142520 hsa-miR-7111-5p 0 1 0
chrX:10142414|10142520 hsa-miR-4728-5p 0 1 0
chrX:10142414|10142520 hsa-miR-6883-5p 0 1 0
chrX:10142414|10142520 hsa-miR-4723-5p 0 1 0
chrX:10142414|10142520 hsa-miR-6785-5p 0 1 0
chrX:10142414|10142520 hsa-miR-526b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:10142414|10142520
ORF Type ORF1
Protein Length 28
Nucleotide Length 84
Protein Sequence MTPWVNTAVRTYTPSPLKVLVWGREGHT
Nucleotide Sequence TTGACTCCGTGGGTGAATACAGCAGTTAGGACATACACACCATCACCTTTGAAAGTGCTTGTTTGGGGGAGGGAAGGACATACG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab