CircRNA Information

General Information
circRNA Basic Information
CircID chrX:10233592|10233761
Strand +
CircType exon
Host Gene ENSG00000073464.10;
Algorism CIRI2;
Sequence TCATTGATGTTTTTGTTTTTGTTTTTAAAGGTTTCATCCTTCTTCCCCGCCTTTCCAAAAAAGCTTTTGTTTCTGCTGTCCCCAATGCATGATCTTTCATTGGGATAATAACATATCATTTATTTCTTTTTAAATGACACAGTCAGTGTTTTTCTGAAAATAATTGCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:10233592|10233761 hsa-miR-33a-5p 0 0 1
chrX:10233592|10233761 hsa-miR-33a-3p 0 0 1
chrX:10233592|10233761 hsa-miR-141-5p 0 0 1
chrX:10233592|10233761 hsa-miR-141-3p 0 0 1
chrX:10233592|10233761 hsa-miR-200a-5p 0 0 1
chrX:10233592|10233761 hsa-miR-200a-3p 0 0 1
chrX:10233592|10233761 hsa-miR-586 0 0 1
chrX:10233592|10233761 hsa-miR-592 0 0 1
chrX:10233592|10233761 hsa-miR-597-5p 0 0 1
chrX:10233592|10233761 hsa-miR-597-3p 0 0 1
chrX:10233592|10233761 hsa-miR-616-5p 0 0 1
chrX:10233592|10233761 hsa-miR-616-3p 0 0 1
chrX:10233592|10233761 hsa-miR-33b-5p 0 0 1
chrX:10233592|10233761 hsa-miR-33b-3p 0 0 1
chrX:10233592|10233761 hsa-miR-892a 0 0 1
chrX:10233592|10233761 hsa-miR-190b-5p 0 0 1
chrX:10233592|10233761 hsa-miR-190b-3p 0 0 1
chrX:10233592|10233761 hsa-miR-922 0 1 1
chrX:10233592|10233761 hsa-miR-943 0 0 1
chrX:10233592|10233761 hsa-miR-944 0 0 1
chrX:10233592|10233761 hsa-miR-129-5p 0 0 1
chrX:10233592|10233761 hsa-miR-548d-3p 0 0 1
chrX:10233592|10233761 hsa-miR-663 0 0 1
chrX:10233592|10233761 hsa-miR-190 0 0 1
chrX:10233592|10233761 hsa-miR-638 1 0 0
chrX:10233592|10233761 hsa-miR-663a 1 0 0
chrX:10233592|10233761 hsa-miR-3138 1 0 0
chrX:10233592|10233761 hsa-miR-3141 1 0 0
chrX:10233592|10233761 hsa-miR-4298 1 0 0
chrX:10233592|10233761 hsa-miR-4271 1 1 0
chrX:10233592|10233761 hsa-miR-1268b 1 0 0
chrX:10233592|10233761 hsa-miR-4429 1 0 0
chrX:10233592|10233761 hsa-miR-4484 1 1 0
chrX:10233592|10233761 hsa-miR-4688 1 0 0
chrX:10233592|10233761 hsa-miR-4706 1 1 0
chrX:10233592|10233761 hsa-miR-4739 1 0 0
chrX:10233592|10233761 hsa-miR-6125 1 0 0
chrX:10233592|10233761 hsa-miR-6165 1 0 0
chrX:10233592|10233761 hsa-miR-7704 1 0 0
chrX:10233592|10233761 hsa-miR-8072 1 0 0
chrX:10233592|10233761 hsa-miR-8089 1 0 0
chrX:10233592|10233761 hsa-miR-6765-5p 1 0 0
chrX:10233592|10233761 hsa-miR-7106-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6728-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6089 1 0 0
chrX:10233592|10233761 hsa-miR-6746-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6810-5p 1 1 0
chrX:10233592|10233761 hsa-miR-4733-5p 0 1 0
chrX:10233592|10233761 hsa-miR-6786-5p 1 0 0
chrX:10233592|10233761 hsa-miR-204-3p 1 0 0
chrX:10233592|10233761 hsa-miR-1229-5p 1 0 0
chrX:10233592|10233761 hsa-miR-1908-5p 1 1 0
chrX:10233592|10233761 hsa-miR-1228-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6802-5p 1 0 0
chrX:10233592|10233761 hsa-miR-450a-2-3p 0 1 0
chrX:10233592|10233761 hsa-miR-214-3p 1 0 0
chrX:10233592|10233761 hsa-miR-1207-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6787-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6743-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6769a-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6808-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6879-5p 1 0 0
chrX:10233592|10233761 hsa-miR-7111-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4728-5p 1 0 0
chrX:10233592|10233761 hsa-miR-5196-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6780b-5p 1 0 0
chrX:10233592|10233761 hsa-miR-10396b-5p 1 0 0
chrX:10233592|10233761 hsa-miR-328-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4632-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4725-3p 1 0 0
chrX:10233592|10233761 hsa-miR-4723-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6885-5p 1 0 0
chrX:10233592|10233761 hsa-miR-1910-3p 1 0 0
chrX:10233592|10233761 hsa-miR-6511a-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4665-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4646-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4747-5p 1 0 0
chrX:10233592|10233761 hsa-miR-6891-5p 1 0 0
chrX:10233592|10233761 hsa-miR-4667-5p 0 1 0
chrX:10233592|10233761 hsa-miR-320a-3p 1 0 0
chrX:10233592|10233761 hsa-miR-320b 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:10233592|10233761
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MMFLFLFLKVSSFFPAFPKKLLFLLSPMHDLSLG
Nucleotide Sequence TTGATGTTTTTGTTTTTGTTTTTAAAGGTTTCATCCTTCTTCCCCGCCTTTCCAAAAAAGCTTTTGTTTCTGCTGTCCCCAATGCATGATCTTTCATTGGGATAA
CircID chrX:10233592|10233761
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MICYYPNERSCIGDSRNKSFFGKAGKKDETFKNKNKNIN
Nucleotide Sequence ATGATATGTTATTATCCCAATGAAAGATCATGCATTGGGGACAGCAGAAACAAAAGCTTTTTTGGAAAGGCGGGGAAGAAGGATGAAACCTTTAAAAACAAAAACAAAAACATCAAT
CircID chrX:10233592|10233761
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MKDHALGTAETKAFLERRGRRMKPLKTKTKTSM
Nucleotide Sequence ATGAAAGATCATGCATTGGGGACAGCAGAAACAAAAGCTTTTTTGGAAAGGCGGGGAAGAAGGATGAAACCTTTAAAAACAAAAACAAAAACATCAATG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab