CircRNA Information

General Information
circRNA Basic Information
CircID chrX:119243877|119244087
Strand +
CircType exon
Host Gene ENSG00000101856.9;
Algorism CIRI2;
Sequence CTGTTCCTATTCTGTATGTCCCTCCCTCATTTCAAATGAGAGTAACCAATTGAGTAAAATAACCAAATAACCATTGCCCCACCATGAACATGGGGCTTGGGAAGACAGTCCTACAATCTTCATCATATATTTAGGTTTTTAGGCCAGCCAGCTCTTTTTTTCCAAAGCTTTCTTTTGAATGTTCAGATCCTATTTTAATCCTAACTATAGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:119243877|119244087 hsa-miR-181c-5p 0 0 1
chrX:119243877|119244087 hsa-miR-181c-3p 0 0 1
chrX:119243877|119244087 hsa-miR-181d-5p 0 0 1
chrX:119243877|119244087 hsa-miR-181d-3p 0 0 1
chrX:119243877|119244087 hsa-miR-579-5p 0 0 1
chrX:119243877|119244087 hsa-miR-579-3p 0 0 1
chrX:119243877|119244087 hsa-miR-651-5p 0 0 1
chrX:119243877|119244087 hsa-miR-651-3p 0 0 1
chrX:119243877|119244087 hsa-miR-659-5p 0 0 1
chrX:119243877|119244087 hsa-miR-659-3p 0 0 1
chrX:119243877|119244087 hsa-miR-888-5p 0 0 1
chrX:119243877|119244087 hsa-miR-888-3p 0 0 1
chrX:119243877|119244087 hsa-miR-541-5p 0 0 1
chrX:119243877|119244087 hsa-miR-541-3p 0 0 1
chrX:119243877|119244087 hsa-miR-543 0 0 1
chrX:119243877|119244087 hsa-miR-1206 0 0 1
chrX:119243877|119244087 hsa-miR-1258 0 0 1
chrX:119243877|119244087 hsa-miR-1272 0 0 1
chrX:119243877|119244087 hsa-miR-1276 0 0 1
chrX:119243877|119244087 hsa-miR-1321 0 0 1
chrX:119243877|119244087 hsa-miR-1322 0 0 1
chrX:119243877|119244087 hsa-miR-486-3p 0 0 1
chrX:119243877|119244087 hsa-miR-654-5p 0 0 1
chrX:119243877|119244087 hsa-miR-409-5p 0 0 1
chrX:119243877|119244087 hsa-miR-508-3p 0 0 1
chrX:119243877|119244087 hsa-miR-548d-3p 0 0 1
chrX:119243877|119244087 hsa-miR-181a 0 0 1
chrX:119243877|119244087 hsa-miR-181b 0 0 1
chrX:119243877|119244087 hsa-miR-203 0 0 1
chrX:119243877|119244087 hsa-miR-1259 0 0 1
chrX:119243877|119244087 hsa-miR-762 1 0 0
chrX:119243877|119244087 hsa-miR-4510 1 0 0
chrX:119243877|119244087 hsa-miR-4539 1 0 0
chrX:119243877|119244087 hsa-miR-4688 1 0 0
chrX:119243877|119244087 hsa-miR-4739 1 0 0
chrX:119243877|119244087 hsa-miR-5093 1 0 0
chrX:119243877|119244087 hsa-miR-6088 1 0 0
chrX:119243877|119244087 hsa-miR-6127 1 0 0
chrX:119243877|119244087 hsa-miR-6799-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6890-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6721-5p 1 0 0
chrX:119243877|119244087 hsa-miR-3151-5p 1 0 0
chrX:119243877|119244087 hsa-miR-3126-5p 1 0 0
chrX:119243877|119244087 hsa-miR-1226-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6834-5p 1 0 0
chrX:119243877|119244087 hsa-miR-149-3p 1 0 0
chrX:119243877|119244087 hsa-miR-6778-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6775-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6743-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6756-5p 1 0 0
chrX:119243877|119244087 hsa-miR-1249-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6779-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6780a-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6797-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6875-5p 1 0 0
chrX:119243877|119244087 hsa-miR-7111-5p 1 0 0
chrX:119243877|119244087 hsa-miR-3620-5p 1 0 0
chrX:119243877|119244087 hsa-miR-4728-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6795-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6858-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6887-5p 1 0 0
chrX:119243877|119244087 hsa-miR-6785-5p 1 0 0
chrX:119243877|119244087 hsa-miR-3184-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:119243877|119244087
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MGRQSYNLHHIFRFLGQPALFFQSFLLNVQILF
Nucleotide Sequence TTGGGAAGACAGTCCTACAATCTTCATCATATATTTAGGTTTTTAGGCCAGCCAGCTCTTTTTTTCCAAAGCTTTCTTTTGAATGTTCAGATCCTATTTTAA
CircID chrX:119243877|119244087
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MMKIVGLSSQAPCSWWGNGYLVILLNWLLSFEMREGHTE
Nucleotide Sequence ATGATGAAGATTGTAGGACTGTCTTCCCAAGCCCCATGTTCATGGTGGGGCAATGGTTATTTGGTTATTTTACTCAATTGGTTACTCTCATTTGAAATGAGGGAGGGACATACAGAATAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab