CircRNA Information

General Information
circRNA Basic Information
CircID chrX:1386346|1386568
Strand +
CircType exon
Host Gene ENSG00000169100.11;
Algorism CIRI2;
Sequence CAGGGGAACCAAGAGAACCACGTAGAATCCTCAACCGTGCGGACCATCAACCTTCGAGAAATTCCAGTTGTCTTTTTCCCAGCCGCATCCTGCCTGTAGATGGCCGGGGAAGGCTCTAGAAAAGGGGCGCATTGCGATCCAACCATCGGCAGCCGATTCCGTGTCTTGATCACGGGGTGGGAGGGAACCGTGGCGTCCCTGCGTGGGGCCCATGGGTGAGACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:1386346|1386568 hsa-miR-659-5p 0 0 1
chrX:1386346|1386568 hsa-miR-659-3p 0 0 1
chrX:1386346|1386568 hsa-miR-940 0 0 1
chrX:1386346|1386568 hsa-miR-1229-5p 0 0 1
chrX:1386346|1386568 hsa-miR-1229-3p 0 0 1
chrX:1386346|1386568 hsa-miR-139-5p 0 0 1
chrX:1386346|1386568 hsa-miR-296-5p 0 0 1
chrX:1386346|1386568 hsa-miR-1224-5p 0 0 1
chrX:1386346|1386568 hsa-miR-532-3p 0 1 1
chrX:1386346|1386568 hsa-miR-1224-3p 0 0 1
chrX:1386346|1386568 hsa-miR-331-3p 0 0 1
chrX:1386346|1386568 hsa-miR-516a-5p 0 0 1
chrX:1386346|1386568 hsa-miR-518d-5p 0 0 1
chrX:1386346|1386568 hsa-miR-519b-5p 0 0 1
chrX:1386346|1386568 hsa-miR-519c-5p 0 0 1
chrX:1386346|1386568 hsa-miR-520c-5p 0 0 1
chrX:1386346|1386568 hsa-miR-1260 0 0 1
chrX:1386346|1386568 hsa-miR-1280 0 0 1
chrX:1386346|1386568 hsa-miR-642 0 0 1
chrX:1386346|1386568 hsa-miR-526a 0 0 1
chrX:1386346|1386568 hsa-miR-549 0 0 1
chrX:1386346|1386568 hsa-miR-1185 0 0 1
chrX:1386346|1386568 hsa-miR-2110 0 1 0
chrX:1386346|1386568 hsa-miR-4462 0 1 0
chrX:1386346|1386568 hsa-miR-4514 1 1 0
chrX:1386346|1386568 hsa-miR-4673 1 1 0
chrX:1386346|1386568 hsa-miR-4692 0 1 0
chrX:1386346|1386568 hsa-miR-4741 1 0 0
chrX:1386346|1386568 hsa-miR-8072 1 0 0
chrX:1386346|1386568 hsa-miR-9899 1 1 0
chrX:1386346|1386568 hsa-miR-211-3p 0 1 0
chrX:1386346|1386568 hsa-miR-4665-3p 1 0 0
chrX:1386346|1386568 hsa-miR-874-5p 0 1 0
chrX:1386346|1386568 hsa-miR-8069 1 1 0
chrX:1386346|1386568 hsa-miR-6832-3p 0 1 0
chrX:1386346|1386568 hsa-miR-6748-5p 1 0 0
chrX:1386346|1386568 hsa-miR-6788-3p 0 1 0
chrX:1386346|1386568 hsa-miR-6763-3p 1 1 0
chrX:1386346|1386568 hsa-miR-204-3p 0 1 0
chrX:1386346|1386568 hsa-miR-1908-3p 1 0 0
chrX:1386346|1386568 hsa-miR-4783-5p 1 0 0
chrX:1386346|1386568 hsa-miR-642b-5p 0 1 0
chrX:1386346|1386568 hsa-miR-4707-5p 1 1 0
chrX:1386346|1386568 hsa-miR-4758-3p 0 1 0
chrX:1386346|1386568 hsa-miR-597-3p 0 1 0
chrX:1386346|1386568 hsa-miR-4529-5p 0 1 0
chrX:1386346|1386568 hsa-miR-1207-5p 1 1 0
chrX:1386346|1386568 hsa-miR-4763-3p 1 0 0
chrX:1386346|1386568 hsa-miR-6893-5p 0 1 0
chrX:1386346|1386568 hsa-miR-6756-5p 1 0 0
chrX:1386346|1386568 hsa-miR-6780a-5p 0 1 0
chrX:1386346|1386568 hsa-miR-6808-5p 0 1 0
chrX:1386346|1386568 hsa-miR-6879-5p 1 0 0
chrX:1386346|1386568 hsa-miR-6511b-5p 1 1 0
chrX:1386346|1386568 hsa-miR-7151-3p 0 1 0
chrX:1386346|1386568 hsa-miR-4646-5p 0 1 0
chrX:1386346|1386568 hsa-miR-6724-5p 0 1 0
chrX:1386346|1386568 hsa-miR-6862-3p 1 1 0
chrX:1386346|1386568 hsa-miR-6781-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:1386346|1386568
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MAGEGSRKGAHCDPTIGSRFRVLITGWEGTVASLRGAHG
Nucleotide Sequence ATGGCCGGGGAAGGCTCTAGAAAAGGGGCGCATTGCGATCCAACCATCGGCAGCCGATTCCGTGTCTTGATCACGGGGTGGGAGGGAACCGTGGCGTCCCTGCGTGGGGCCCATGGGTGA
CircID chrX:1386346|1386568
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MSFSQPHPACRWPGKALEKGRIAIQPSAADSVS
Nucleotide Sequence TTGTCTTTTTCCCAGCCGCATCCTGCCTGTAGATGGCCGGGGAAGGCTCTAGAAAAGGGGCGCATTGCGATCCAACCATCGGCAGCCGATTCCGTGTCTTGA
CircID chrX:1386346|1386568
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MRSNHRQPIPCLDHGVGGNRGVPAWGPWVR
Nucleotide Sequence TTGCGATCCAACCATCGGCAGCCGATTCCGTGTCTTGATCACGGGGTGGGAGGGAACCGTGGCGTCCCTGCGTGGGGCCCATGGGTGAGA
CircID chrX:1386346|1386568
ORF Type ORF4
Protein Length 60
Nucleotide Length 183
Protein Sequence MGPTQGRHGSLPPRDQDTESAADGWIAMRPFSRAFPGHLQAGCGWEKDNWNFSKVDGPHG
Nucleotide Sequence ATGGGCCCCACGCAGGGACGCCACGGTTCCCTCCCACCCCGTGATCAAGACACGGAATCGGCTGCCGATGGTTGGATCGCAATGCGCCCCTTTTCTAGAGCCTTCCCCGGCCATCTACAGGCAGGATGCGGCTGGGAAAAAGACAACTGGAATTTCTCGAAGGTTGATGGTCCGCACGGTTGA
CircID chrX:1386346|1386568
ORF Type ORF5
Protein Length 50
Nucleotide Length 150
Protein Sequence MPMVGSQCAPFLEPSPAIYRQDAAGKKTTGISRRLMVRTVEDSTWFSWFP
Nucleotide Sequence CTGCCGATGGTTGGATCGCAATGCGCCCCTTTTCTAGAGCCTTCCCCGGCCATCTACAGGCAGGATGCGGCTGGGAAAAAGACAACTGGAATTTCTCGAAGGTTGATGGTCCGCACGGTTGAGGATTCTACGTGGTTCTCTTGGTTCCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab