CircRNA Information

General Information
circRNA Basic Information
CircID chrX:1386548|1386703
Strand -
CircType exon
Host Gene ENSG00000169100.11;
Algorism CIRI2;
Sequence GTGGTTCTCTTGGTTCCCCTGGTGTGTGTGTGTGTGTGGAGGAGGCCGCGGCCCTTAGATCACCTTCTTGAGCTCGTCGTACAGGACCAGCACGAAGGCGCCCCCCATGCCCCGCAGGACGTTGGACCACGCACCCTTGAAGAAGGCCTTGCCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:1386548|1386703 hsa-miR-517-5p 0 0 1
chrX:1386548|1386703 hsa-miR-517a-3p 0 0 1
chrX:1386548|1386703 hsa-miR-517c-3p 0 0 1
chrX:1386548|1386703 hsa-miR-589-5p 0 0 1
chrX:1386548|1386703 hsa-miR-589-3p 0 0 1
chrX:1386548|1386703 hsa-miR-744-5p 0 0 1
chrX:1386548|1386703 hsa-miR-744-3p 0 0 1
chrX:1386548|1386703 hsa-miR-1248 0 0 1
chrX:1386548|1386703 hsa-miR-486-5p 0 1 1
chrX:1386548|1386703 hsa-miR-566 0 0 1
chrX:1386548|1386703 hsa-miR-362-3p 0 0 1
chrX:1386548|1386703 hsa-miR-138 0 0 1
chrX:1386548|1386703 hsa-miR-329 0 0 1
chrX:1386548|1386703 hsa-miR-663a 1 0 0
chrX:1386548|1386703 hsa-miR-762 1 0 0
chrX:1386548|1386703 hsa-miR-1245a 0 1 0
chrX:1386548|1386703 hsa-miR-1268a 1 0 0
chrX:1386548|1386703 hsa-miR-466 1 0 0
chrX:1386548|1386703 hsa-miR-3185 1 0 0
chrX:1386548|1386703 hsa-miR-3941 1 0 0
chrX:1386548|1386703 hsa-miR-1268b 1 0 0
chrX:1386548|1386703 hsa-miR-4466 1 0 0
chrX:1386548|1386703 hsa-miR-4706 1 0 0
chrX:1386548|1386703 hsa-miR-4734 1 0 0
chrX:1386548|1386703 hsa-miR-5193 0 1 0
chrX:1386548|1386703 hsa-miR-8485 1 1 0
chrX:1386548|1386703 hsa-miR-323a-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6510-5p 1 0 0
chrX:1386548|1386703 hsa-miR-7114-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6727-5p 1 0 0
chrX:1386548|1386703 hsa-miR-3622b-5p 0 1 0
chrX:1386548|1386703 hsa-miR-6721-5p 1 1 0
chrX:1386548|1386703 hsa-miR-4655-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6881-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6782-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6821-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6786-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6753-5p 0 1 0
chrX:1386548|1386703 hsa-miR-7152-3p 0 1 0
chrX:1386548|1386703 hsa-miR-6767-5p 1 0 0
chrX:1386548|1386703 hsa-miR-3670 1 0 0
chrX:1386548|1386703 hsa-miR-181d-3p 1 0 0
chrX:1386548|1386703 hsa-miR-1207-5p 1 0 0
chrX:1386548|1386703 hsa-miR-4763-3p 1 0 0
chrX:1386548|1386703 hsa-miR-6775-5p 1 1 0
chrX:1386548|1386703 hsa-miR-1343-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6752-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6851-5p 1 1 0
chrX:1386548|1386703 hsa-miR-6722-3p 1 0 0
chrX:1386548|1386703 hsa-miR-6780b-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6836-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6862-5p 0 1 0
chrX:1386548|1386703 hsa-miR-10396a-5p 0 1 0
chrX:1386548|1386703 hsa-miR-1237-5p 0 1 0
chrX:1386548|1386703 hsa-miR-328-5p 1 0 0
chrX:1386548|1386703 hsa-miR-939-5p 1 0 0
chrX:1386548|1386703 hsa-miR-10394-3p 1 0 0
chrX:1386548|1386703 hsa-miR-498-5p 1 0 0
chrX:1386548|1386703 hsa-miR-6792-3p 0 1 0
chrX:1386548|1386703 hsa-miR-6829-3p 0 1 0
chrX:1386548|1386703 hsa-miR-375-5p 1 0 0
chrX:1386548|1386703 hsa-miR-329-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:1386548|1386703
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MVPLVCVCVWRRPRPLDHLLELVVQDQHEGAPHAPQDVGPRTLEEGLAP
Nucleotide Sequence TTGGTTCCCCTGGTGTGTGTGTGTGTGTGGAGGAGGCCGCGGCCCTTAGATCACCTTCTTGAGCTCGTCGTACAGGACCAGCACGAAGGCGCCCCCCATGCCCCGCAGGACGTTGGACCACGCACCCTTGAAGAAGGCCTTGCCCCC
CircID chrX:1386548|1386703
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MSSSYRTSTKAPPMPRRTLDHAPLKKALP
Nucleotide Sequence TTGAGCTCGTCGTACAGGACCAGCACGAAGGCGCCCCCCATGCCCCGCAGGACGTTGGACCACGCACCCTTGAAGAAGGCCTTGCCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab