CircRNA Information

General Information
circRNA Basic Information
CircID chrX:150619055|150619267
Strand +
CircType exon
Host Gene ENSG00000171100.13;
Algorism CIRI2;
Sequence CTCTGCAGACACATCACACTGGGAAACACAACACAGACATTAAAAGAAAGAGGATCCCAGTTTGCAGGCAGTTTTCACAGAGGAGGCACTGAGAACCTTCCCACGCTGAGGAGAGCACTGGAATTTACCAGACTGTGAGCCAGGGGAAACGCGTATCTCGTGAGGATCTCAAACATATCTCTTCTGCTGTGGCCTTCCTGTTTCAAAGCGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:150619055|150619267 hsa-miR-27a-5p 0 0 1
chrX:150619055|150619267 hsa-miR-27a-3p 0 0 1
chrX:150619055|150619267 hsa-miR-148a-5p 0 0 1
chrX:150619055|150619267 hsa-miR-148a-3p 0 0 1
chrX:150619055|150619267 hsa-miR-27b-5p 0 0 1
chrX:150619055|150619267 hsa-miR-27b-3p 0 0 1
chrX:150619055|150619267 hsa-miR-152-5p 0 0 1
chrX:150619055|150619267 hsa-miR-152-3p 0 0 1
chrX:150619055|150619267 hsa-miR-149-5p 0 0 1
chrX:150619055|150619267 hsa-miR-149-3p 0 0 1
chrX:150619055|150619267 hsa-miR-148b-5p 0 0 1
chrX:150619055|150619267 hsa-miR-148b-3p 0 0 1
chrX:150619055|150619267 hsa-miR-346 0 0 1
chrX:150619055|150619267 hsa-miR-494-5p 0 0 1
chrX:150619055|150619267 hsa-miR-494-3p 0 0 1
chrX:150619055|150619267 hsa-miR-519e-5p 0 0 1
chrX:150619055|150619267 hsa-miR-519e-3p 0 0 1
chrX:150619055|150619267 hsa-miR-570-5p 0 0 1
chrX:150619055|150619267 hsa-miR-570-3p 0 0 1
chrX:150619055|150619267 hsa-miR-622 0 1 1
chrX:150619055|150619267 hsa-miR-632 0 0 1
chrX:150619055|150619267 hsa-miR-638 0 0 1
chrX:150619055|150619267 hsa-miR-298 0 1 1
chrX:150619055|150619267 hsa-miR-190b-5p 0 0 1
chrX:150619055|150619267 hsa-miR-190b-3p 0 0 1
chrX:150619055|150619267 hsa-miR-922 0 0 1
chrX:150619055|150619267 hsa-miR-1205 0 0 1
chrX:150619055|150619267 hsa-miR-548e-5p 0 0 1
chrX:150619055|150619267 hsa-miR-548e-3p 0 0 1
chrX:150619055|150619267 hsa-miR-1825 1 1 1
chrX:150619055|150619267 hsa-miR-145-5p 0 0 1
chrX:150619055|150619267 hsa-miR-199a-5p 0 0 1
chrX:150619055|150619267 hsa-miR-1184 0 0 1
chrX:150619055|150619267 hsa-miR-331-3p 0 0 1
chrX:150619055|150619267 hsa-miR-654-3p 0 0 1
chrX:150619055|150619267 hsa-miR-199b-5p 0 0 1
chrX:150619055|150619267 hsa-miR-769-3p 0 0 1
chrX:150619055|150619267 hsa-miR-515-3p 0 1 1
chrX:150619055|150619267 hsa-miR-450b-3p 0 0 1
chrX:150619055|150619267 hsa-miR-548a-3p 0 0 1
chrX:150619055|150619267 hsa-miR-128 0 0 1
chrX:150619055|150619267 hsa-miR-548f 0 0 1
chrX:150619055|150619267 hsa-miR-24 0 0 1
chrX:150619055|150619267 hsa-miR-190 0 0 1
chrX:150619055|150619267 hsa-miR-3650 0 1 0
chrX:150619055|150619267 hsa-miR-4476 0 1 0
chrX:150619055|150619267 hsa-miR-4706 1 0 0
chrX:150619055|150619267 hsa-miR-4739 1 0 0
chrX:150619055|150619267 hsa-miR-6125 1 0 0
chrX:150619055|150619267 hsa-miR-6126 1 0 0
chrX:150619055|150619267 hsa-miR-212-5p 0 1 0
chrX:150619055|150619267 hsa-miR-6881-3p 1 0 0
chrX:150619055|150619267 hsa-miR-3192-5p 1 0 0
chrX:150619055|150619267 hsa-miR-4722-5p 0 1 0
chrX:150619055|150619267 hsa-miR-4753-5p 1 1 0
chrX:150619055|150619267 hsa-miR-6832-3p 1 0 0
chrX:150619055|150619267 hsa-miR-6845-3p 0 1 0
chrX:150619055|150619267 hsa-miR-4753-3p 1 0 0
chrX:150619055|150619267 hsa-miR-6882-3p 1 0 0
chrX:150619055|150619267 hsa-miR-615-5p 1 0 0
chrX:150619055|150619267 hsa-miR-3922-5p 1 0 0
chrX:150619055|150619267 hsa-miR-4707-5p 1 0 0
chrX:150619055|150619267 hsa-miR-6854-3p 0 1 0
chrX:150619055|150619267 hsa-miR-1251-3p 1 0 0
chrX:150619055|150619267 hsa-miR-597-3p 0 1 0
chrX:150619055|150619267 hsa-miR-4717-5p 1 1 0
chrX:150619055|150619267 hsa-miR-6754-5p 1 0 0
chrX:150619055|150619267 hsa-miR-6780b-5p 1 0 0
chrX:150619055|150619267 hsa-miR-4725-3p 1 0 0
chrX:150619055|150619267 hsa-miR-6876-5p 0 1 0
chrX:150619055|150619267 hsa-miR-6829-3p 0 1 0
chrX:150619055|150619267 hsa-miR-520f-3p 0 1 0
chrX:150619055|150619267 hsa-miR-33b-3p 0 1 0
chrX:150619055|150619267 hsa-miR-6876-3p 1 0 0
chrX:150619055|150619267 hsa-miR-520a-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chrX:150619055|150619267
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MGNTTQTLKERGSQFAGSFHRGGTENLPTLRRALEFTRL
Nucleotide Sequence CTGGGAAACACAACACAGACATTAAAAGAAAGAGGATCCCAGTTTGCAGGCAGTTTTCACAGAGGAGGCACTGAGAACCTTCCCACGCTGAGGAGAGCACTGGAATTTACCAGACTGTGA
CircID chrX:150619055|150619267
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence LQTHHTGKHNTDIKRKRIPVCRQFSQRRH
Nucleotide Sequence CTGCAGACACATCACACTGGGAAACACAACACAGACATTAAAAGAAAGAGGATCCCAGTTTGCAGGCAGTTTTCACAGAGGAGGCACTGA
CircID chrX:150619055|150619267
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MKQEGHSRRDMFEILTRYAFPLAHSLVNSSALLSVGRFSVPPL
Nucleotide Sequence TTGAAACAGGAAGGCCACAGCAGAAGAGATATGTTTGAGATCCTCACGAGATACGCGTTTCCCCTGGCTCACAGTCTGGTAAATTCCAGTGCTCTCCTCAGCGTGGGAAGGTTCTCAGTGCCTCCTCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab