CircRNA Information

General Information
circRNA Basic Information
CircID chrX:152914710|152914823
Strand +
CircType exon
Host Gene ENSG00000147394.17;
Algorism CIRI2;
Sequence CCTCCGATTCATCCTGCTTGGTAATCCAGCTCTTGTCCCCCTTCAGCGTGGTTCGCACTTTCATCTGCTTGAGAACGTTATTGCGCTCCTCCTCGCCTGGTGGCAGAGGCTTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:152914710|152914823 hsa-miR-17-5p 0 0 1
chrX:152914710|152914823 hsa-miR-17-3p 0 0 1
chrX:152914710|152914823 hsa-miR-20a-5p 0 0 1
chrX:152914710|152914823 hsa-miR-20a-3p 0 0 1
chrX:152914710|152914823 hsa-miR-93-5p 0 0 1
chrX:152914710|152914823 hsa-miR-93-3p 0 0 1
chrX:152914710|152914823 hsa-miR-106a-5p 0 0 1
chrX:152914710|152914823 hsa-miR-106a-3p 0 0 1
chrX:152914710|152914823 hsa-miR-106b-5p 0 0 1
chrX:152914710|152914823 hsa-miR-106b-3p 0 0 1
chrX:152914710|152914823 hsa-miR-335-5p 0 0 1
chrX:152914710|152914823 hsa-miR-335-3p 0 0 1
chrX:152914710|152914823 hsa-miR-20b-5p 0 0 1
chrX:152914710|152914823 hsa-miR-20b-3p 0 0 1
chrX:152914710|152914823 hsa-miR-519d-5p 0 0 1
chrX:152914710|152914823 hsa-miR-519d-3p 0 0 1
chrX:152914710|152914823 hsa-miR-765 0 0 1
chrX:152914710|152914823 hsa-miR-1287-5p 0 0 1
chrX:152914710|152914823 hsa-miR-1287-3p 0 0 1
chrX:152914710|152914823 hsa-miR-513c-5p 0 0 1
chrX:152914710|152914823 hsa-miR-513c-3p 0 0 1
chrX:152914710|152914823 hsa-miR-671-5p 0 0 1
chrX:152914710|152914823 hsa-miR-151-5p 0 0 1
chrX:152914710|152914823 hsa-miR-663a 1 0 0
chrX:152914710|152914823 hsa-miR-762 1 0 0
chrX:152914710|152914823 hsa-miR-761 0 1 0
chrX:152914710|152914823 hsa-miR-3154 1 0 0
chrX:152914710|152914823 hsa-miR-4525 1 0 0
chrX:152914710|152914823 hsa-miR-1587 1 0 0
chrX:152914710|152914823 hsa-miR-4706 1 0 0
chrX:152914710|152914823 hsa-miR-4739 1 0 0
chrX:152914710|152914823 hsa-miR-4788 1 0 0
chrX:152914710|152914823 hsa-miR-5698 1 1 0
chrX:152914710|152914823 hsa-miR-6734-5p 1 1 0
chrX:152914710|152914823 hsa-miR-6765-5p 1 0 0
chrX:152914710|152914823 hsa-miR-125a-3p 1 0 0
chrX:152914710|152914823 hsa-miR-6732-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6798-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6874-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6810-5p 1 0 0
chrX:152914710|152914823 hsa-miR-7109-3p 0 1 0
chrX:152914710|152914823 hsa-miR-7109-5p 1 0 0
chrX:152914710|152914823 hsa-miR-5010-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6864-5p 0 1 0
chrX:152914710|152914823 hsa-miR-423-5p 1 0 0
chrX:152914710|152914823 hsa-miR-3191-3p 1 0 0
chrX:152914710|152914823 hsa-miR-6787-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6870-5p 1 0 0
chrX:152914710|152914823 hsa-miR-5001-5p 1 0 0
chrX:152914710|152914823 hsa-miR-1249-5p 1 0 0
chrX:152914710|152914823 hsa-miR-7111-5p 1 0 0
chrX:152914710|152914823 hsa-miR-3620-5p 1 0 0
chrX:152914710|152914823 hsa-miR-4728-5p 1 0 0
chrX:152914710|152914823 hsa-miR-10396b-5p 1 0 0
chrX:152914710|152914823 hsa-miR-10526-3p 1 0 0
chrX:152914710|152914823 hsa-miR-328-5p 1 0 0
chrX:152914710|152914823 hsa-miR-4649-5p 1 0 0
chrX:152914710|152914823 hsa-miR-4749-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6738-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6794-5p 1 1 0
chrX:152914710|152914823 hsa-miR-6795-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6858-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6887-5p 1 0 0
chrX:152914710|152914823 hsa-miR-4723-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6885-5p 1 0 0
chrX:152914710|152914823 hsa-miR-4665-5p 1 0 0
chrX:152914710|152914823 hsa-miR-6877-3p 1 1 0
chrX:152914710|152914823 hsa-miR-4716-3p 1 1 0
chrX:152914710|152914823 hsa-miR-6819-3p 0 1 0
chrX:152914710|152914823 hsa-miR-301a-3p 0 1 0
chrX:152914710|152914823 hsa-miR-301b-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:152914710|152914823
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MLGNPALVPLQRGSHFHLLENVIALLLAWWQRL
Nucleotide Sequence CTGCTTGGTAATCCAGCTCTTGTCCCCCTTCAGCGTGGTTCGCACTTTCATCTGCTTGAGAACGTTATTGCGCTCCTCCTCGCCTGGTGGCAGAGGCTT
CircID chrX:152914710|152914823
ORF Type ORF2
Protein Length 32
Nucleotide Length 96
Protein Sequence MVIQLLSPFSVVRTFICLRTLLRSSSPGGRGF
Nucleotide Sequence TTGGTAATCCAGCTCTTGTCCCCCTTCAGCGTGGTTCGCACTTTCATCTGCTTGAGAACGTTATTGCGCTCCTCCTCGCCTGGTGGCAGAGGCTTC
CircID chrX:152914710|152914823
ORF Type ORF3
Protein Length 35
Nucleotide Length 105
Protein Sequence MPPGEEERNNVLKQMKVRTTLKGDKSWITKQDESE
Nucleotide Sequence CTGCCACCAGGCGAGGAGGAGCGCAATAACGTTCTCAAGCAGATGAAAGTGCGAACCACGCTGAAGGGGGACAAGAGCTGGATTACCAAGCAGGATGAATCGGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab