CircRNA Information

General Information
circRNA Basic Information
CircID chrX:154011720|154011902
Strand +
CircType exon
Host Gene ENSG00000184216.10;
Algorism CIRI2;
Sequence AGGACAGGCAGGGGCCCGAAGAAAGTGATGAATTTCAGAGCTGATGTGTTCACCTGGGCAGATCCCCCAAATCCGGAAGTCAAAGTTCTCATGGTCAGAAGTTCTCATGGTGCACGAGTCCTCAGCACTCTGCCGGCAGTGGGGGTGGGGGCCCATGCCCGCGGGGGAGAGAAGGAGGTGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:154011720|154011902 hsa-miR-146a-5p 0 0 1
chrX:154011720|154011902 hsa-miR-146a-3p 0 0 1
chrX:154011720|154011902 hsa-miR-517-5p 0 0 1
chrX:154011720|154011902 hsa-miR-517a-3p 0 0 1
chrX:154011720|154011902 hsa-miR-517b-3p 0 0 1
chrX:154011720|154011902 hsa-miR-517c-3p 0 0 1
chrX:154011720|154011902 hsa-miR-589-5p 0 0 1
chrX:154011720|154011902 hsa-miR-589-3p 0 0 1
chrX:154011720|154011902 hsa-miR-591 0 1 1
chrX:154011720|154011902 hsa-miR-617 0 1 1
chrX:154011720|154011902 hsa-miR-625-5p 0 0 1
chrX:154011720|154011902 hsa-miR-625-3p 0 0 1
chrX:154011720|154011902 hsa-miR-942-5p 0 0 1
chrX:154011720|154011902 hsa-miR-942-3p 0 0 1
chrX:154011720|154011902 hsa-miR-1237-5p 0 0 1
chrX:154011720|154011902 hsa-miR-1237-3p 0 0 1
chrX:154011720|154011902 hsa-miR-1248 0 0 1
chrX:154011720|154011902 hsa-miR-1275 0 0 1
chrX:154011720|154011902 hsa-miR-125a-3p 0 0 1
chrX:154011720|154011902 hsa-miR-296-5p 0 1 1
chrX:154011720|154011902 hsa-miR-512-3p 0 0 1
chrX:154011720|154011902 hsa-miR-1224-5p 0 1 1
chrX:154011720|154011902 hsa-miR-767-5p 1 1 1
chrX:154011720|154011902 hsa-miR-324-3p 0 1 1
chrX:154011720|154011902 hsa-miR-146b-5p 0 1 1
chrX:154011720|154011902 hsa-miR-759 0 1 0
chrX:154011720|154011902 hsa-miR-1281 0 1 0
chrX:154011720|154011902 hsa-miR-3181 0 1 0
chrX:154011720|154011902 hsa-miR-4286 0 1 0
chrX:154011720|154011902 hsa-miR-4451 1 0 0
chrX:154011720|154011902 hsa-miR-4525 0 1 0
chrX:154011720|154011902 hsa-miR-5705 1 0 0
chrX:154011720|154011902 hsa-miR-92a-2-5p 1 0 0
chrX:154011720|154011902 hsa-miR-6747-3p 0 1 0
chrX:154011720|154011902 hsa-miR-210-5p 0 1 0
chrX:154011720|154011902 hsa-miR-7160-5p 0 1 0
chrX:154011720|154011902 hsa-miR-6820-5p 1 0 0
chrX:154011720|154011902 hsa-miR-3187-3p 1 0 0
chrX:154011720|154011902 hsa-miR-6868-3p 0 1 0
chrX:154011720|154011902 hsa-miR-6514-3p 0 1 0
chrX:154011720|154011902 hsa-miR-4667-3p 0 1 0
chrX:154011720|154011902 hsa-miR-1306-5p 0 1 0
chrX:154011720|154011902 hsa-miR-1224-3p 1 1 0
chrX:154011720|154011902 hsa-miR-6880-3p 1 0 0
chrX:154011720|154011902 hsa-miR-518c-5p 0 1 0
chrX:154011720|154011902 hsa-miR-10400-5p 1 0 0
chrX:154011720|154011902 hsa-miR-4763-3p 1 0 0
chrX:154011720|154011902 hsa-miR-320a-5p 0 1 0
chrX:154011720|154011902 hsa-miR-6831-5p 1 0 0
chrX:154011720|154011902 hsa-miR-4665-5p 1 0 0
chrX:154011720|154011902 hsa-miR-9851-5p 1 1 0
chrX:154011720|154011902 hsa-miR-6801-3p 0 1 0
chrX:154011720|154011902 hsa-miR-6810-3p 0 1 0
chrX:154011720|154011902 hsa-miR-6833-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:154011720|154011902
ORF Type ORF1
Protein Length 52
Nucleotide Length 156
Protein Sequence MNFRADVFTWADPPNPEVKVLMVRSSHGARVLSTLPAVGVGAHARGGEKEVA
Nucleotide Sequence ATGAATTTCAGAGCTGATGTGTTCACCTGGGCAGATCCCCCAAATCCGGAAGTCAAAGTTCTCATGGTCAGAAGTTCTCATGGTGCACGAGTCCTCAGCACTCTGCCGGCAGTGGGGGTGGGGGCCCATGCCCGCGGGGGAGAGAAGGAGGTGGCC
CircID chrX:154011720|154011902
ORF Type ORF2
Protein Length 47
Nucleotide Length 141
Protein Sequence MMCSPGQIPQIRKSKFSWSEVLMVHESSALCRQWGWGPMPAGERRRW
Nucleotide Sequence CTGATGTGTTCACCTGGGCAGATCCCCCAAATCCGGAAGTCAAAGTTCTCATGGTCAGAAGTTCTCATGGTGCACGAGTCCTCAGCACTCTGCCGGCAGTGGGGGTGGGGGCCCATGCCCGCGGGGGAGAGAAGGAGGTGG
CircID chrX:154011720|154011902
ORF Type ORF3
Protein Length 43
Nucleotide Length 129
Protein Sequence MGRSPKSGSQSSHGQKFSWCTSPQHSAGSGGGGPCPRGREGGG
Nucleotide Sequence CTGGGCAGATCCCCCAAATCCGGAAGTCAAAGTTCTCATGGTCAGAAGTTCTCATGGTGCACGAGTCCTCAGCACTCTGCCGGCAGTGGGGGTGGGGGCCCATGCCCGCGGGGGAGAGAAGGAGGTGGC
CircID chrX:154011720|154011902
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MGPHPHCRQSAEDSCTMRTSDHENFDFRIWGICPGEHISSEIHHFLRAPACP
Nucleotide Sequence ATGGGCCCCCACCCCCACTGCCGGCAGAGTGCTGAGGACTCGTGCACCATGAGAACTTCTGACCATGAGAACTTTGACTTCCGGATTTGGGGGATCTGCCCAGGTGAACACATCAGCTCTGAAATTCATCACTTTCTTCGGGCCCCTGCCTGTCCT
CircID chrX:154011720|154011902
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MTMRTLTSGFGGSAQVNTSALKFITFFGPLPV
Nucleotide Sequence CTGACCATGAGAACTTTGACTTCCGGATTTGGGGGATCTGCCCAGGTGAACACATCAGCTCTGAAATTCATCACTTTCTTCGGGCCCCTGCCTGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab