CircRNA Information

General Information
circRNA Basic Information
CircID chrX:154351981|154352364
Strand +
CircType exon
Host Gene ENSG00000196924.13;
Algorism CIRI2;
Sequence CACACCTACTGCATCCGCTTTGTTCCCGCTGAGATGGGCACACACACAGTCAGCGTGAAGTACAAGGGCCAGCACGTGCCTGGGAGCCCCTTCCAGTTCACCGTGGGGCCCCTAGGGGAAGGGGGAGCCCACAAGGTCCGAGCTGGGGGCCCTGGCCTGGAGAGAGCTGAAGCTGGAGTGCCAGGTAGGCCTGCTCACACCCCGAGTGCTCGCTCTCCTGCGTTGGCCAGGGTGGGGTTGGGGGTGGAGGAAAGAGCCGGCAGGCATGTCTACCTTGGCTATGCCTGGAGGGGGCCGAGGCTGGTGAAGCAGCCTTCAGTGAGGACAAACTGTTCTCCCACAGCCGAATTCAGTATCTGGACCCGGGAAGCTGGTGCTGGAGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:154351981|154352364 hsa-miR-29a-5p 0 0 1
chrX:154351981|154352364 hsa-miR-29a-3p 0 0 1
chrX:154351981|154352364 hsa-miR-197-5p 0 0 1
chrX:154351981|154352364 hsa-miR-197-3p 0 0 1
chrX:154351981|154352364 hsa-miR-198 1 0 1
chrX:154351981|154352364 hsa-miR-29c-5p 0 0 1
chrX:154351981|154352364 hsa-miR-29c-3p 0 0 1
chrX:154351981|154352364 hsa-miR-379-5p 0 0 1
chrX:154351981|154352364 hsa-miR-379-3p 0 0 1
chrX:154351981|154352364 hsa-miR-328-5p 0 0 1
chrX:154351981|154352364 hsa-miR-328-3p 0 0 1
chrX:154351981|154352364 hsa-miR-412-5p 0 0 1
chrX:154351981|154352364 hsa-miR-412-3p 0 0 1
chrX:154351981|154352364 hsa-miR-619-5p 0 0 1
chrX:154351981|154352364 hsa-miR-619-3p 0 0 1
chrX:154351981|154352364 hsa-miR-766-5p 0 0 1
chrX:154351981|154352364 hsa-miR-766-3p 0 0 1
chrX:154351981|154352364 hsa-miR-892a 0 0 1
chrX:154351981|154352364 hsa-miR-943 0 0 1
chrX:154351981|154352364 hsa-miR-1226-5p 0 0 1
chrX:154351981|154352364 hsa-miR-1226-3p 0 0 1
chrX:154351981|154352364 hsa-miR-1238-5p 0 0 1
chrX:154351981|154352364 hsa-miR-1238-3p 0 0 1
chrX:154351981|154352364 hsa-miR-1291 0 0 1
chrX:154351981|154352364 hsa-miR-296-5p 0 1 1
chrX:154351981|154352364 hsa-miR-508-5p 0 0 1
chrX:154351981|154352364 hsa-miR-361-3p 0 1 1
chrX:154351981|154352364 hsa-miR-338-3p 0 0 1
chrX:154351981|154352364 hsa-miR-29b 0 0 1
chrX:154351981|154352364 hsa-miR-923 0 0 1
chrX:154351981|154352364 hsa-miR-346 1 0 0
chrX:154351981|154352364 hsa-miR-596 1 0 0
chrX:154351981|154352364 hsa-miR-637 1 0 0
chrX:154351981|154352364 hsa-miR-1913 1 0 0
chrX:154351981|154352364 hsa-miR-4296 0 1 0
chrX:154351981|154352364 hsa-miR-4322 0 1 0
chrX:154351981|154352364 hsa-miR-4265 0 1 0
chrX:154351981|154352364 hsa-miR-4267 0 1 0
chrX:154351981|154352364 hsa-miR-3918 0 1 0
chrX:154351981|154352364 hsa-miR-3943 1 0 0
chrX:154351981|154352364 hsa-miR-3135b 1 0 0
chrX:154351981|154352364 hsa-miR-4515 1 0 0
chrX:154351981|154352364 hsa-miR-4673 0 1 0
chrX:154351981|154352364 hsa-miR-4706 1 1 0
chrX:154351981|154352364 hsa-miR-4794 0 1 0
chrX:154351981|154352364 hsa-miR-6069 1 1 0
chrX:154351981|154352364 hsa-miR-7974 0 1 0
chrX:154351981|154352364 hsa-miR-8073 1 0 0
chrX:154351981|154352364 hsa-miR-4731-5p 1 0 0
chrX:154351981|154352364 hsa-miR-6747-3p 1 0 0
chrX:154351981|154352364 hsa-miR-6747-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6836-3p 1 0 0
chrX:154351981|154352364 hsa-miR-149-5p 1 1 0
chrX:154351981|154352364 hsa-miR-205-3p 0 1 0
chrX:154351981|154352364 hsa-miR-1972 0 1 0
chrX:154351981|154352364 hsa-miR-8071 0 1 0
chrX:154351981|154352364 hsa-miR-4722-5p 0 1 0
chrX:154351981|154352364 hsa-miR-3064-5p 0 1 0
chrX:154351981|154352364 hsa-miR-874-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6875-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6762-3p 1 1 0
chrX:154351981|154352364 hsa-miR-6849-3p 1 1 0
chrX:154351981|154352364 hsa-miR-615-5p 0 1 0
chrX:154351981|154352364 hsa-miR-4763-5p 1 1 0
chrX:154351981|154352364 hsa-miR-6763-3p 1 0 0
chrX:154351981|154352364 hsa-miR-6894-3p 1 1 0
chrX:154351981|154352364 hsa-miR-30c-2-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6514-3p 1 0 0
chrX:154351981|154352364 hsa-miR-1228-5p 1 0 0
chrX:154351981|154352364 hsa-miR-4690-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6749-5p 1 0 0
chrX:154351981|154352364 hsa-miR-1304-3p 1 1 0
chrX:154351981|154352364 hsa-miR-6789-5p 1 1 0
chrX:154351981|154352364 hsa-miR-3925-3p 0 1 0
chrX:154351981|154352364 hsa-miR-103b 0 1 0
chrX:154351981|154352364 hsa-miR-3065-3p 0 1 0
chrX:154351981|154352364 hsa-miR-3922-5p 1 0 0
chrX:154351981|154352364 hsa-miR-3191-3p 1 0 0
chrX:154351981|154352364 hsa-miR-4707-5p 1 1 0
chrX:154351981|154352364 hsa-miR-6813-3p 1 0 0
chrX:154351981|154352364 hsa-miR-6793-3p 1 1 0
chrX:154351981|154352364 hsa-miR-2355-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6741-3p 1 1 0
chrX:154351981|154352364 hsa-miR-4761-5p 0 1 0
chrX:154351981|154352364 hsa-miR-653-3p 0 1 0
chrX:154351981|154352364 hsa-miR-3124-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6767-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6851-3p 0 1 0
chrX:154351981|154352364 hsa-miR-221-5p 0 1 0
chrX:154351981|154352364 hsa-miR-1233-5p 1 1 0
chrX:154351981|154352364 hsa-miR-6778-5p 1 1 0
chrX:154351981|154352364 hsa-miR-1343-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6743-5p 1 0 0
chrX:154351981|154352364 hsa-miR-6788-5p 0 1 0
chrX:154351981|154352364 hsa-miR-3127-3p 1 1 0
chrX:154351981|154352364 hsa-miR-6754-3p 1 1 0
chrX:154351981|154352364 hsa-miR-4685-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6795-5p 1 0 0
chrX:154351981|154352364 hsa-miR-939-5p 1 1 0
chrX:154351981|154352364 hsa-miR-4758-5p 1 0 0
chrX:154351981|154352364 hsa-miR-30c-1-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6731-5p 0 1 0
chrX:154351981|154352364 hsa-miR-1914-3p 1 0 0
chrX:154351981|154352364 hsa-miR-3184-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6724-5p 0 1 0
chrX:154351981|154352364 hsa-miR-10398-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6791-5p 1 0 0
chrX:154351981|154352364 hsa-miR-6893-3p 1 0 0
chrX:154351981|154352364 hsa-miR-6756-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6792-3p 0 1 0
chrX:154351981|154352364 hsa-miR-10400-3p 0 1 0
chrX:154351981|154352364 hsa-miR-6837-5p 0 1 0
chrX:154351981|154352364 hsa-miR-10392-3p 1 1 0
chrX:154351981|154352364 hsa-miR-4691-5p 0 1 0
chrX:154351981|154352364 hsa-miR-6876-3p 1 0 0
chrX:154351981|154352364 hsa-miR-6715b-5p 0 1 0
chrX:154351981|154352364 hsa-miR-1271-5p 1 0 0
chrX:154351981|154352364 hsa-miR-3922-3p 0 1 0
chrX:154351981|154352364 hsa-miR-3927-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:154351981|154352364
ORF Type ORF1
Protein Length 117
Nucleotide Length 351
Protein Sequence MGTHTVSVKYKGQHVPGSPFQFTVGPLGEGGAHKVRAGGPGLERAEAGVPGRPAHTPSARSPALARVGLGVEERAGRHVYLGYAWRGPRLVKQPSVRTNCSPTAEFSIWTREAGAGG
Nucleotide Sequence ATGGGCACACACACAGTCAGCGTGAAGTACAAGGGCCAGCACGTGCCTGGGAGCCCCTTCCAGTTCACCGTGGGGCCCCTAGGGGAAGGGGGAGCCCACAAGGTCCGAGCTGGGGGCCCTGGCCTGGAGAGAGCTGAAGCTGGAGTGCCAGGTAGGCCTGCTCACACCCCGAGTGCTCGCTCTCCTGCGTTGGCCAGGGTGGGGTTGGGGGTGGAGGAAAGAGCCGGCAGGCATGTCTACCTTGGCTATGCCTGGAGGGGGCCGAGGCTGGTGAAGCAGCCTTCAGTGAGGACAAACTGTTCTCCCACAGCCGAATTCAGTATCTGGACCCGGGAAGCTGGTGCTGGAGGC
CircID chrX:154351981|154352364
ORF Type ORF2
Protein Length 54
Nucleotide Length 165
Protein Sequence MGALAWRELKLECQVGLLTPRVLALLRWPGWGWGWRKEPAGMSTLAMPGGGRGW
Nucleotide Sequence CTGGGGGCCCTGGCCTGGAGAGAGCTGAAGCTGGAGTGCCAGGTAGGCCTGCTCACACCCCGAGTGCTCGCTCTCCTGCGTTGGCCAGGGTGGGGTTGGGGGTGGAGGAAAGAGCCGGCAGGCATGTCTACCTTGGCTATGCCTGGAGGGGGCCGAGGCTGGTGA
CircID chrX:154351981|154352364
ORF Type ORF3
Protein Length 33
Nucleotide Length 99
Protein Sequence MEGAEAGEAAFSEDKLFSHSRIQYLDPGSWCWR
Nucleotide Sequence CTGGAGGGGGCCGAGGCTGGTGAAGCAGCCTTCAGTGAGGACAAACTGTTCTCCCACAGCCGAATTCAGTATCTGGACCCGGGAAGCTGGTGCTGGAGG
CircID chrX:154351981|154352364
ORF Type ORF4
Protein Length 66
Nucleotide Length 201
Protein Sequence MLHQPRPPPGIAKVDMPAGSFLHPQPHPGQRRRASTRGVSRPTWHSSFSSLQARAPSSDLVGSPFP
Nucleotide Sequence CTGCTTCACCAGCCTCGGCCCCCTCCAGGCATAGCCAAGGTAGACATGCCTGCCGGCTCTTTCCTCCACCCCCAACCCCACCCTGGCCAACGCAGGAGAGCGAGCACTCGGGGTGTGAGCAGGCCTACCTGGCACTCCAGCTTCAGCTCTCTCCAGGCCAGGGCCCCCAGCTCGGACCTTGTGGGCTCCCCCTTCCCCTAG
CircID chrX:154351981|154352364
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MEGAPRHVLALVLHADCVCAHLSGNKADAVGV
Nucleotide Sequence CTGGAAGGGGCTCCCAGGCACGTGCTGGCCCTTGTACTTCACGCTGACTGTGTGTGTGCCCATCTCAGCGGGAACAAAGCGGATGCAGTAGGTGTG
CircID chrX:154351981|154352364
ORF Type ORF6
Protein Length 42
Nucleotide Length 129
Protein Sequence MWAPPSPRGPTVNWKGLPGTCWPLYFTLTVCVPISAGTKRMQ
Nucleotide Sequence TTGTGGGCTCCCCCTTCCCCTAGGGGCCCCACGGTGAACTGGAAGGGGCTCCCAGGCACGTGCTGGCCCTTGTACTTCACGCTGACTGTGTGTGTGCCCATCTCAGCGGGAACAAAGCGGATGCAGTAG
CircID chrX:154351981|154352364
ORF Type ORF7
Protein Length 81
Nucleotide Length 246
Protein Sequence MWENSLSSLKAASPASAPSRHSQGRHACRLFPPPPTPPWPTQESEHSGCEQAYLALQLQLSPGQGPQLGPCGLPLPLGAPR
Nucleotide Sequence CTGTGGGAGAACAGTTTGTCCTCACTGAAGGCTGCTTCACCAGCCTCGGCCCCCTCCAGGCATAGCCAAGGTAGACATGCCTGCCGGCTCTTTCCTCCACCCCCAACCCCACCCTGGCCAACGCAGGAGAGCGAGCACTCGGGGTGTGAGCAGGCCTACCTGGCACTCCAGCTTCAGCTCTCTCCAGGCCAGGGCCCCCAGCTCGGACCTTGTGGGCTCCCCCTTCCCCTAGGGGCCCCACGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab