CircRNA Information

General Information
circRNA Basic Information
CircID chrX:154354266|154354648
Strand -
CircType exon
Host Gene ENSG00000196924.13;
Algorism CIRI2;
Sequence CTTGCCTGAGGGCATCCGAACCTCCCCTGTGATCTCGCCCTTCTTGATGGTGAAGGGGATGACAAGGTCAAAGGGCCTCAGGCTGGTCACATCCAGCCCATTGACACCCACCAGGGGCCTCTCCGGGGCCTGCAGTGGAGACACAGGGCATGGGTGAGGGACAGTGGGAGGATCTGGGGTCCCTCCTCACACATGGTAAACTAGGGGCTCACAGAACACCCAGCTGGCTAGCCCCAGTGTCCCTAGCTGGCCAGGCCGTACCCAAGTCTGCTGGCCGCCCTGGGCGTAGGTGTA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:154354266|154354648 hsa-miR-192-5p 0 0 1
chrX:154354266|154354648 hsa-miR-192-3p 0 0 1
chrX:154354266|154354648 hsa-miR-197-5p 0 0 1
chrX:154354266|154354648 hsa-miR-197-3p 0 0 1
chrX:154354266|154354648 hsa-miR-215-5p 0 0 1
chrX:154354266|154354648 hsa-miR-215-3p 0 0 1
chrX:154354266|154354648 hsa-miR-412-5p 0 0 1
chrX:154354266|154354648 hsa-miR-412-3p 0 0 1
chrX:154354266|154354648 hsa-miR-575 0 0 1
chrX:154354266|154354648 hsa-miR-609 0 0 1
chrX:154354266|154354648 hsa-miR-874-5p 0 0 1
chrX:154354266|154354648 hsa-miR-874-3p 0 0 1
chrX:154354266|154354648 hsa-miR-541-5p 0 0 1
chrX:154354266|154354648 hsa-miR-541-3p 0 0 1
chrX:154354266|154354648 hsa-miR-922 0 0 1
chrX:154354266|154354648 hsa-miR-1234-3p 0 0 1
chrX:154354266|154354648 hsa-miR-1205 0 0 1
chrX:154354266|154354648 hsa-miR-1287-5p 0 0 1
chrX:154354266|154354648 hsa-miR-1287-3p 0 0 1
chrX:154354266|154354648 hsa-miR-1294 0 0 1
chrX:154354266|154354648 hsa-miR-1234 0 0 1
chrX:154354266|154354648 hsa-miR-1225-3p 1 0 1
chrX:154354266|154354648 hsa-miR-532-3p 0 0 1
chrX:154354266|154354648 hsa-miR-146b-3p 0 0 1
chrX:154354266|154354648 hsa-miR-1225-5p 1 1 1
chrX:154354266|154354648 hsa-miR-654-5p 0 0 1
chrX:154354266|154354648 hsa-miR-1207-3p 0 0 1
chrX:154354266|154354648 hsa-miR-331-3p 0 0 1
chrX:154354266|154354648 hsa-miR-513a-5p 0 1 1
chrX:154354266|154354648 hsa-miR-509-3-5p 0 0 1
chrX:154354266|154354648 hsa-miR-509-5p 0 0 1
chrX:154354266|154354648 hsa-miR-1233 0 0 1
chrX:154354266|154354648 hsa-miR-220c 0 0 1
chrX:154354266|154354648 hsa-miR-762 1 0 0
chrX:154354266|154354648 hsa-miR-3141 0 1 0
chrX:154354266|154354648 hsa-miR-3154 0 1 0
chrX:154354266|154354648 hsa-miR-3196 1 0 0
chrX:154354266|154354648 hsa-miR-4281 0 1 0
chrX:154354266|154354648 hsa-miR-3652 0 1 0
chrX:154354266|154354648 hsa-miR-4418 0 1 0
chrX:154354266|154354648 hsa-miR-4430 0 1 0
chrX:154354266|154354648 hsa-miR-4466 1 0 0
chrX:154354266|154354648 hsa-miR-4489 0 1 0
chrX:154354266|154354648 hsa-miR-4675 1 0 0
chrX:154354266|154354648 hsa-miR-4734 0 1 0
chrX:154354266|154354648 hsa-miR-4741 1 0 0
chrX:154354266|154354648 hsa-miR-10226 0 1 0
chrX:154354266|154354648 hsa-miR-12126 0 1 0
chrX:154354266|154354648 hsa-miR-134-3p 1 1 0
chrX:154354266|154354648 hsa-miR-6749-3p 0 1 0
chrX:154354266|154354648 hsa-miR-4726-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6825-5p 1 1 0
chrX:154354266|154354648 hsa-miR-1233-3p 1 0 0
chrX:154354266|154354648 hsa-miR-6799-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6089 1 0 0
chrX:154354266|154354648 hsa-miR-5589-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6776-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6849-3p 0 1 0
chrX:154354266|154354648 hsa-miR-7845-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6742-5p 1 0 0
chrX:154354266|154354648 hsa-miR-1292-5p 1 0 0
chrX:154354266|154354648 hsa-miR-3180-3p 1 0 0
chrX:154354266|154354648 hsa-miR-6748-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6772-5p 1 0 0
chrX:154354266|154354648 hsa-miR-185-3p 1 0 0
chrX:154354266|154354648 hsa-miR-2467-5p 0 1 0
chrX:154354266|154354648 hsa-miR-5008-5p 0 1 0
chrX:154354266|154354648 hsa-miR-1229-5p 1 0 0
chrX:154354266|154354648 hsa-miR-4743-5p 1 0 0
chrX:154354266|154354648 hsa-miR-6824-5p 1 1 0
chrX:154354266|154354648 hsa-miR-3190-5p 0 1 0
chrX:154354266|154354648 hsa-miR-4646-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6895-3p 0 1 0
chrX:154354266|154354648 hsa-miR-4649-3p 1 0 0
chrX:154354266|154354648 hsa-miR-6760-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6851-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6729-3p 0 1 0
chrX:154354266|154354648 hsa-miR-4771 0 1 0
chrX:154354266|154354648 hsa-miR-6509-3p 0 1 0
chrX:154354266|154354648 hsa-miR-4677-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6512-5p 0 1 0
chrX:154354266|154354648 hsa-miR-10400-5p 1 0 0
chrX:154354266|154354648 hsa-miR-4763-3p 1 0 0
chrX:154354266|154354648 hsa-miR-6816-5p 1 0 0
chrX:154354266|154354648 hsa-miR-1343-5p 1 0 0
chrX:154354266|154354648 hsa-miR-5001-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6756-5p 1 0 0
chrX:154354266|154354648 hsa-miR-6769a-5p 0 1 0
chrX:154354266|154354648 hsa-miR-7107-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6722-3p 1 0 0
chrX:154354266|154354648 hsa-miR-6875-5p 0 1 0
chrX:154354266|154354648 hsa-miR-7111-5p 1 0 0
chrX:154354266|154354648 hsa-miR-1915-3p 1 1 0
chrX:154354266|154354648 hsa-miR-3620-5p 1 1 0
chrX:154354266|154354648 hsa-miR-1909-3p 1 0 0
chrX:154354266|154354648 hsa-miR-4632-5p 1 0 0
chrX:154354266|154354648 hsa-miR-4649-5p 1 0 0
chrX:154354266|154354648 hsa-miR-4685-5p 1 0 0
chrX:154354266|154354648 hsa-miR-6858-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6511b-5p 0 1 0
chrX:154354266|154354648 hsa-miR-324-3p 0 1 0
chrX:154354266|154354648 hsa-miR-10398-3p 0 1 0
chrX:154354266|154354648 hsa-miR-3184-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6784-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6862-3p 0 1 0
chrX:154354266|154354648 hsa-miR-6837-5p 0 1 0
chrX:154354266|154354648 hsa-miR-125a-5p 0 1 0
chrX:154354266|154354648 hsa-miR-10394-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6764-5p 0 1 0
chrX:154354266|154354648 hsa-miR-6811-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:154354266|154354648
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence LPEGIRTSPVISPFLMVKGMTRSKGLRLVTSSPLTPTRGLSGACSGDTGHG
Nucleotide Sequence TTGCCTGAGGGCATCCGAACCTCCCCTGTGATCTCGCCCTTCTTGATGGTGAAGGGGATGACAAGGTCAAAGGGCCTCAGGCTGGTCACATCCAGCCCATTGACACCCACCAGGGGCCTCTCCGGGGCCTGCAGTGGAGACACAGGGCATGGGTGA
CircID chrX:154354266|154354648
ORF Type ORF2
Protein Length 48
Nucleotide Length 144
Protein Sequence MGEGQWEDLGSLLTHGKLGAHRTPSWLAPVSLAGQAVPKSAGRPGRRC
Nucleotide Sequence ATGGGTGAGGGACAGTGGGAGGATCTGGGGTCCCTCCTCACACATGGTAAACTAGGGGCTCACAGAACACCCAGCTGGCTAGCCCCAGTGTCCCTAGCTGGCCAGGCCGTACCCAAGTCTGCTGGCCGCCCTGGGCGTAGGTGT
CircID chrX:154354266|154354648
ORF Type ORF3
Protein Length 45
Nucleotide Length 135
Protein Sequence MQAPERPLVGVNGLDVTSLRPFDLVIPFTIKKGEITGEVRMPSGK
Nucleotide Sequence CTGCAGGCCCCGGAGAGGCCCCTGGTGGGTGTCAATGGGCTGGATGTGACCAGCCTGAGGCCCTTTGACCTTGTCATCCCCTTCACCATCAAGAAGGGCGAGATCACAGGGGAGGTTCGGATGCCCTCAGGCAAG
CircID chrX:154354266|154354648
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MCEEGPQILPLSLTHALCLHCRPRRGPWWVSMGWM
Nucleotide Sequence ATGTGTGAGGAGGGACCCCAGATCCTCCCACTGTCCCTCACCCATGCCCTGTGTCTCCACTGCAGGCCCCGGAGAGGCCCCTGGTGGGTGTCAATGGGCTGGATGTGA
CircID chrX:154354266|154354648
ORF Type ORF5
Protein Length 27
Nucleotide Length 84
Protein Sequence MPCVSTAGPGEAPGGCQWAGCDQPEAL
Nucleotide Sequence ATGCCCTGTGTCTCCACTGCAGGCCCCGGAGAGGCCCCTGGTGGGTGTCAATGGGCTGGATGTGACCAGCCTGAGGCCCTTTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab