CircRNA Information

General Information
circRNA Basic Information
CircID chrX:154488880|154489082
Strand -
CircType exon
Host Gene ENSG00000126903.14;
Algorism CIRI2;
Sequence CACCCTCGCCCCCCAGACCAGGCCACTGCTGAGAGCTGCCCTTGTCCTGCATTAACACCATGGCTCTTCCTGGAGGACGGATGGCGTGCCCAGGCCCTCTGCGGCTTAGGAGAACATCCCCACTGGTGCTGTTGGGTTGTCCTGAGAAGGGTTCATGGGTGGGTCCCAGTCCTGTGCTGTCTTCCTTGATGGCAGGGCTGTCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:154488880|154489082 hsa-miR-29a-5p 0 0 1
chrX:154488880|154489082 hsa-miR-29a-3p 0 0 1
chrX:154488880|154489082 hsa-miR-214-5p 0 0 1
chrX:154488880|154489082 hsa-miR-214-3p 0 0 1
chrX:154488880|154489082 hsa-miR-155-5p 0 0 1
chrX:154488880|154489082 hsa-miR-155-3p 0 0 1
chrX:154488880|154489082 hsa-miR-29c-5p 0 0 1
chrX:154488880|154489082 hsa-miR-29c-3p 0 0 1
chrX:154488880|154489082 hsa-miR-569 0 0 1
chrX:154488880|154489082 hsa-miR-612 0 1 1
chrX:154488880|154489082 hsa-miR-637 0 0 1
chrX:154488880|154489082 hsa-miR-661 1 0 1
chrX:154488880|154489082 hsa-miR-665 0 0 1
chrX:154488880|154489082 hsa-miR-922 0 0 1
chrX:154488880|154489082 hsa-miR-1286 0 1 1
chrX:154488880|154489082 hsa-miR-1266-5p 0 0 1
chrX:154488880|154489082 hsa-miR-1266-3p 0 0 1
chrX:154488880|154489082 hsa-miR-491-5p 0 0 1
chrX:154488880|154489082 hsa-miR-7 0 0 1
chrX:154488880|154489082 hsa-miR-1285 0 0 1
chrX:154488880|154489082 hsa-miR-29b 0 0 1
chrX:154488880|154489082 hsa-miR-1204 1 1 0
chrX:154488880|154489082 hsa-miR-1295a 1 1 0
chrX:154488880|154489082 hsa-miR-2861 1 0 0
chrX:154488880|154489082 hsa-miR-3169 0 1 0
chrX:154488880|154489082 hsa-miR-4270 1 0 0
chrX:154488880|154489082 hsa-miR-3909 1 0 0
chrX:154488880|154489082 hsa-miR-4418 1 0 0
chrX:154488880|154489082 hsa-miR-4436a 1 1 0
chrX:154488880|154489082 hsa-miR-4453 1 0 0
chrX:154488880|154489082 hsa-miR-4507 1 0 0
chrX:154488880|154489082 hsa-miR-4515 0 1 0
chrX:154488880|154489082 hsa-miR-1587 1 0 0
chrX:154488880|154489082 hsa-miR-3960 1 0 0
chrX:154488880|154489082 hsa-miR-4673 1 0 0
chrX:154488880|154489082 hsa-miR-4688 1 0 0
chrX:154488880|154489082 hsa-miR-6077 0 1 0
chrX:154488880|154489082 hsa-miR-6132 1 0 0
chrX:154488880|154489082 hsa-miR-6860 1 0 0
chrX:154488880|154489082 hsa-miR-4433b-3p 1 0 0
chrX:154488880|154489082 hsa-miR-4700-3p 0 1 0
chrX:154488880|154489082 hsa-miR-4665-3p 1 0 0
chrX:154488880|154489082 hsa-miR-8071 1 0 0
chrX:154488880|154489082 hsa-miR-3663-3p 1 0 0
chrX:154488880|154489082 hsa-miR-7847-3p 1 0 0
chrX:154488880|154489082 hsa-miR-6746-5p 1 0 0
chrX:154488880|154489082 hsa-miR-4722-5p 1 0 0
chrX:154488880|154489082 hsa-miR-197-5p 1 0 0
chrX:154488880|154489082 hsa-miR-3663-5p 0 1 0
chrX:154488880|154489082 hsa-miR-6798-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6760-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6850-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6786-5p 1 0 0
chrX:154488880|154489082 hsa-miR-4640-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6753-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6749-5p 1 0 0
chrX:154488880|154489082 hsa-miR-659-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6830-5p 0 1 0
chrX:154488880|154489082 hsa-miR-194-3p 0 1 0
chrX:154488880|154489082 hsa-miR-339-5p 0 1 0
chrX:154488880|154489082 hsa-miR-3065-3p 0 1 0
chrX:154488880|154489082 hsa-miR-1180-5p 0 1 0
chrX:154488880|154489082 hsa-miR-383-3p 1 0 0
chrX:154488880|154489082 hsa-miR-7113-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6856-3p 0 1 0
chrX:154488880|154489082 hsa-miR-1296-3p 0 1 0
chrX:154488880|154489082 hsa-miR-4763-3p 1 0 0
chrX:154488880|154489082 hsa-miR-6752-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6754-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6803-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6842-5p 1 0 0
chrX:154488880|154489082 hsa-miR-7107-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6722-3p 1 0 0
chrX:154488880|154489082 hsa-miR-3620-5p 1 0 0
chrX:154488880|154489082 hsa-miR-6836-5p 1 0 0
chrX:154488880|154489082 hsa-miR-1237-5p 0 1 0
chrX:154488880|154489082 hsa-miR-1909-3p 1 0 0
chrX:154488880|154489082 hsa-miR-328-5p 0 1 0
chrX:154488880|154489082 hsa-miR-4632-5p 1 1 0
chrX:154488880|154489082 hsa-miR-4649-5p 0 1 0
chrX:154488880|154489082 hsa-miR-6729-5p 0 1 0
chrX:154488880|154489082 hsa-miR-6848-5p 1 0 0
chrX:154488880|154489082 hsa-miR-4436b-3p 0 1 0
chrX:154488880|154489082 hsa-miR-6831-5p 1 0 0
chrX:154488880|154489082 hsa-miR-939-5p 1 0 0
chrX:154488880|154489082 hsa-miR-7843-5p 1 1 0
chrX:154488880|154489082 hsa-miR-6876-5p 1 0 0
chrX:154488880|154489082 hsa-miR-7114-3p 0 1 0
chrX:154488880|154489082 hsa-miR-4691-5p 1 1 0
chrX:154488880|154489082 hsa-miR-6817-5p 0 1 0
chrX:154488880|154489082 hsa-miR-4800-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:154488880|154489082
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MEDGWRAQALCGLGEHPHWCCWVVLRRVHGWVPVLCCLP
Nucleotide Sequence CTGGAGGACGGATGGCGTGCCCAGGCCCTCTGCGGCTTAGGAGAACATCCCCACTGGTGCTGTTGGGTTGTCCTGAGAAGGGTTCATGGGTGGGTCCCAGTCCTGTGCTGTCTTCCTTGA
CircID chrX:154488880|154489082
ORF Type ORF2
Protein Length 56
Nucleotide Length 168
Protein Sequence MPLSCINTMALPGGRMACPGPLRLRRTSPLVLLGCPEKGSWVGPSPVLSSLMAGLS
Nucleotide Sequence CTGCCCTTGTCCTGCATTAACACCATGGCTCTTCCTGGAGGACGGATGGCGTGCCCAGGCCCTCTGCGGCTTAGGAGAACATCCCCACTGGTGCTGTTGGGTTGTCCTGAGAAGGGTTCATGGGTGGGTCCCAGTCCTGTGCTGTCTTCCTTGATGGCAGGGCTGTCC
CircID chrX:154488880|154489082
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MGPTHEPFSGQPNSTSGDVLLSRRGPGHAIRPPGRAMVLMQDKGSSQQWPGLGGEG
Nucleotide Sequence CTGGGACCCACCCATGAACCCTTCTCAGGACAACCCAACAGCACCAGTGGGGATGTTCTCCTAAGCCGCAGAGGGCCTGGGCACGCCATCCGTCCTCCAGGAAGAGCCATGGTGTTAATGCAGGACAAGGGCAGCTCTCAGCAGTGGCCTGGTCTGGGGGGCGAGGGT
CircID chrX:154488880|154489082
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MPSRKTAQDWDPPMNPSQDNPTAPVGMFS
Nucleotide Sequence CTGCCATCAAGGAAGACAGCACAGGACTGGGACCCACCCATGAACCCTTCTCAGGACAACCCAACAGCACCAGTGGGGATGTTCTCCTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab