CircRNA Information

General Information
circRNA Basic Information
CircID chrX:41345248|41345548
Strand +
CircType exon
Host Gene ENSG00000215301.8;
Algorism CIRI2;
Sequence CTGTTGCATTTAGGAGGTCAAGCAGAAATGACCGTTTGTCTGATTCTTCCACCCAAACTACTTTCTGTGTGATGTTTTCAGAGGTAGAGCCAACTCTTCCTACAGCCAAGAAGATATATTCATCTAAGAAATCACGAGCCAGCATCTGAAAGAAAAAAAATTTTTATTATTACCTGAGATAAACAAATTTCTAAATAAATAAAATTTGCAACATCAAACAGTACCTGTATTTCCTTAGGAAAAGTAGCACTAAACATCATAGTGTGGCGGACACCCTTTGGAGGCATAGTATCTTGTTCGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:41345248|41345548 hsa-miR-192-5p 0 0 1
chrX:41345248|41345548 hsa-miR-192-3p 0 0 1
chrX:41345248|41345548 hsa-miR-215-5p 0 0 1
chrX:41345248|41345548 hsa-miR-215-3p 0 0 1
chrX:41345248|41345548 hsa-miR-149-5p 0 0 1
chrX:41345248|41345548 hsa-miR-149-3p 0 0 1
chrX:41345248|41345548 hsa-miR-377-5p 0 0 1
chrX:41345248|41345548 hsa-miR-377-3p 0 0 1
chrX:41345248|41345548 hsa-miR-384 0 0 1
chrX:41345248|41345548 hsa-miR-452-5p 0 0 1
chrX:41345248|41345548 hsa-miR-452-3p 0 0 1
chrX:41345248|41345548 hsa-miR-520f-5p 0 0 1
chrX:41345248|41345548 hsa-miR-520f-3p 0 0 1
chrX:41345248|41345548 hsa-miR-527 0 0 1
chrX:41345248|41345548 hsa-miR-552-5p 0 0 1
chrX:41345248|41345548 hsa-miR-552-3p 0 0 1
chrX:41345248|41345548 hsa-miR-553 0 0 1
chrX:41345248|41345548 hsa-miR-570-5p 0 0 1
chrX:41345248|41345548 hsa-miR-570-3p 0 0 1
chrX:41345248|41345548 hsa-miR-571 0 0 1
chrX:41345248|41345548 hsa-miR-647 0 0 1
chrX:41345248|41345548 hsa-miR-760 0 0 1
chrX:41345248|41345548 hsa-miR-1293 0 0 1
chrX:41345248|41345548 hsa-miR-1262 0 0 1
chrX:41345248|41345548 hsa-miR-1266-5p 0 0 1
chrX:41345248|41345548 hsa-miR-1266-3p 0 0 1
chrX:41345248|41345548 hsa-miR-1272 0 0 1
chrX:41345248|41345548 hsa-miR-1322 0 0 1
chrX:41345248|41345548 hsa-miR-1324 0 0 1
chrX:41345248|41345548 hsa-miR-512-3p 0 0 1
chrX:41345248|41345548 hsa-miR-532-5p 0 0 1
chrX:41345248|41345548 hsa-miR-1244 0 0 1
chrX:41345248|41345548 hsa-miR-518a-5p 0 0 1
chrX:41345248|41345548 hsa-miR-590-3p 0 0 1
chrX:41345248|41345548 hsa-miR-548c-3p 0 0 1
chrX:41345248|41345548 hsa-miR-7 0 0 1
chrX:41345248|41345548 hsa-miR-544 0 0 1
chrX:41345248|41345548 hsa-miR-499-3p 0 0 1
chrX:41345248|41345548 hsa-miR-4462 1 0 0
chrX:41345248|41345548 hsa-miR-6745 1 0 0
chrX:41345248|41345548 hsa-miR-4687-3p 1 0 0
chrX:41345248|41345548 hsa-miR-6880-5p 1 0 0
chrX:41345248|41345548 hsa-miR-5580-5p 1 0 0
chrX:41345248|41345548 hsa-miR-485-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:41345248|41345548
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MSDSSTQTTFCVMFSEVEPTLPTAKKIYSSKKSRASI
Nucleotide Sequence TTGTCTGATTCTTCCACCCAAACTACTTTCTGTGTGATGTTTTCAGAGGTAGAGCCAACTCTTCCTACAGCCAAGAAGATATATTCATCTAAGAAATCACGAGCCAGCATCTGA
CircID chrX:41345248|41345548
ORF Type ORF2
Protein Length 25
Nucleotide Length 75
Protein Sequence MYFLRKSSTKHHSVADTLWRHSILF
Nucleotide Sequence CTGTATTTCCTTAGGAAAAGTAGCACTAAACATCATAGTGTGGCGGACACCCTTTGGAGGCATAGTATCTTGTTC
CircID chrX:41345248|41345548
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MLARDFLDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNAT
Nucleotide Sequence ATGCTGGCTCGTGATTTCTTAGATGAATATATCTTCTTGGCTGTAGGAAGAGTTGGCTCTACCTCTGAAAACATCACACAGAAAGTAGTTTGGGTGGAAGAATCAGACAAACGGTCATTTCTGCTTGACCTCCTAAATGCAACA
CircID chrX:41345248|41345548
ORF Type ORF4
Protein Length 51
Nucleotide Length 156
Protein Sequence MPPKGVRHTMMFSATFPKEIQVLFDVANFIYLEICLSQVIIKIFFLSDAGS
Nucleotide Sequence ATGCCTCCAAAGGGTGTCCGCCACACTATGATGTTTAGTGCTACTTTTCCTAAGGAAATACAGGTACTGTTTGATGTTGCAAATTTTATTTATTTAGAAATTTGTTTATCTCAGGTAATAATAAAAATTTTTTTTCTTTCAGATGCTGGCTCGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab