CircRNA Information

General Information
circRNA Basic Information
CircID chrX:47202184|47202453
Strand -
CircType exon
Host Gene ENSG00000130985.15;
Algorism CIRI2;
Sequence CTCCAACTTCTCCGACTACATCCGTGGAGGCATCGTCAGTCAGGTCAAAGTACCTAAGAAGATTAGCTTTGTGAGTGTGTCGATGGGATCAGTGGGCTGTGGGGGGTGGTTCTAGGCATTCCCTAGTTCTCCATTCCTCTCTTCTGGTTCTGATGACCTCTCCCCCCGCCACAGAAATCCTTGGTGGCCTCACTGGCAGAACCTGACTTTGTGGTGACGGACTTCGCCAAGTTTTCTCGCCCTGCCCAGCTGCACATTGGCTTCCAGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:47202184|47202453 hsa-miR-192-5p 0 0 1
chrX:47202184|47202453 hsa-miR-192-3p 0 0 1
chrX:47202184|47202453 hsa-miR-197-5p 0 0 1
chrX:47202184|47202453 hsa-miR-197-3p 0 0 1
chrX:47202184|47202453 hsa-miR-215-5p 0 0 1
chrX:47202184|47202453 hsa-miR-215-3p 0 0 1
chrX:47202184|47202453 hsa-miR-146a-5p 0 0 1
chrX:47202184|47202453 hsa-miR-146a-3p 0 0 1
chrX:47202184|47202453 hsa-miR-603 -3 0 1
chrX:47202184|47202453 hsa-miR-612 -24 1 1
chrX:47202184|47202453 hsa-miR-631 -6 0 1
chrX:47202184|47202453 hsa-miR-1301-5p 0 0 1
chrX:47202184|47202453 hsa-miR-1301-3p 0 0 1
chrX:47202184|47202453 hsa-miR-671-5p -21 1 1
chrX:47202184|47202453 hsa-miR-331-5p -12 0 1
chrX:47202184|47202453 hsa-miR-1207-3p -9 0 1
chrX:47202184|47202453 hsa-miR-1207-5p -18 0 1
chrX:47202184|47202453 hsa-miR-146b-5p -5 0 1
chrX:47202184|47202453 hsa-miR-876-5p -2 0 1
chrX:47202184|47202453 hsa-miR-220b 0 0 1
chrX:47202184|47202453 hsa-miR-1285 0 0 1
chrX:47202184|47202453 hsa-miR-1254 0 0 1
chrX:47202184|47202453 hsa-miR-663 0 0 1
chrX:47202184|47202453 hsa-miR-663a 1 0 0
chrX:47202184|47202453 hsa-miR-762 1 0 0
chrX:47202184|47202453 hsa-miR-940 1 0 0
chrX:47202184|47202453 hsa-miR-1268a 1 0 0
chrX:47202184|47202453 hsa-miR-3141 1 0 0
chrX:47202184|47202453 hsa-miR-3147 1 0 0
chrX:47202184|47202453 hsa-miR-3175 -12 1 0
chrX:47202184|47202453 hsa-miR-320e 1 0 0
chrX:47202184|47202453 hsa-miR-4316 -11 1 0
chrX:47202184|47202453 hsa-miR-4259 1 0 0
chrX:47202184|47202453 hsa-miR-1268b 1 0 0
chrX:47202184|47202453 hsa-miR-4486 1 0 0
chrX:47202184|47202453 hsa-miR-4492 1 0 0
chrX:47202184|47202453 hsa-miR-4505 1 0 0
chrX:47202184|47202453 hsa-miR-4507 1 0 0
chrX:47202184|47202453 hsa-miR-4515 1 0 0
chrX:47202184|47202453 hsa-miR-1587 1 0 0
chrX:47202184|47202453 hsa-miR-4660 1 0 0
chrX:47202184|47202453 hsa-miR-4706 1 0 0
chrX:47202184|47202453 hsa-miR-4739 1 0 0
chrX:47202184|47202453 hsa-miR-5047 1 0 0
chrX:47202184|47202453 hsa-miR-5090 1 0 0
chrX:47202184|47202453 hsa-miR-5739 1 0 0
chrX:47202184|47202453 hsa-miR-5787 1 0 0
chrX:47202184|47202453 hsa-miR-6090 1 0 0
chrX:47202184|47202453 hsa-miR-6132 -16 1 0
chrX:47202184|47202453 hsa-miR-6860 -27 1 0
chrX:47202184|47202453 hsa-miR-7150 -23 1 0
chrX:47202184|47202453 hsa-miR-8072 1 0 0
chrX:47202184|47202453 hsa-miR-8085 -17 1 0
chrX:47202184|47202453 hsa-miR-181a-3p -10 1 0
chrX:47202184|47202453 hsa-miR-6765-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6861-5p 1 0 0
chrX:47202184|47202453 hsa-miR-7106-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6089 1 0 0
chrX:47202184|47202453 hsa-miR-6807-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6880-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6721-5p 1 0 0
chrX:47202184|47202453 hsa-miR-181a-2-3p -14 1 0
chrX:47202184|47202453 hsa-miR-4711-5p 0 1 0
chrX:47202184|47202453 hsa-miR-6798-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6786-5p 1 0 0
chrX:47202184|47202453 hsa-miR-4786-3p -15 1 0
chrX:47202184|47202453 hsa-miR-1229-5p 1 0 0
chrX:47202184|47202453 hsa-miR-1908-5p 1 0 0
chrX:47202184|47202453 hsa-miR-1228-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6802-5p 1 0 0
chrX:47202184|47202453 hsa-miR-7156-3p 1 0 0
chrX:47202184|47202453 hsa-miR-2115-3p -7 1 0
chrX:47202184|47202453 hsa-miR-194-3p 1 0 0
chrX:47202184|47202453 hsa-miR-7112-5p 1 0 0
chrX:47202184|47202453 hsa-miR-3944-5p -19 1 0
chrX:47202184|47202453 hsa-miR-6856-3p -12 1 0
chrX:47202184|47202453 hsa-miR-3151-3p -14 1 0
chrX:47202184|47202453 hsa-miR-541-5p -6 1 0
chrX:47202184|47202453 hsa-miR-500a-3p 1 0 0
chrX:47202184|47202453 hsa-miR-4763-3p -22 1 0
chrX:47202184|47202453 hsa-miR-6769b-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6787-5p -20 1 0
chrX:47202184|47202453 hsa-miR-6816-5p 1 0 0
chrX:47202184|47202453 hsa-miR-5001-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6756-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6722-3p 1 0 0
chrX:47202184|47202453 hsa-miR-6774-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6779-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6808-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6879-5p 1 0 0
chrX:47202184|47202453 hsa-miR-3620-5p 1 0 0
chrX:47202184|47202453 hsa-miR-4728-5p 1 0 0
chrX:47202184|47202453 hsa-miR-5189-5p -19 1 0
chrX:47202184|47202453 hsa-miR-5196-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6836-5p 1 0 0
chrX:47202184|47202453 hsa-miR-10396a-5p 1 0 0
chrX:47202184|47202453 hsa-miR-10396b-5p 1 0 0
chrX:47202184|47202453 hsa-miR-1909-3p 1 0 0
chrX:47202184|47202453 hsa-miR-328-5p 1 0 0
chrX:47202184|47202453 hsa-miR-4649-5p 1 0 0
chrX:47202184|47202453 hsa-miR-4685-5p 1 0 0
chrX:47202184|47202453 hsa-miR-4725-3p 1 0 0
chrX:47202184|47202453 hsa-miR-6729-5p -18 1 0
chrX:47202184|47202453 hsa-miR-6795-5p -17 1 0
chrX:47202184|47202453 hsa-miR-6887-5p -19 1 0
chrX:47202184|47202453 hsa-miR-3187-5p -23 1 0
chrX:47202184|47202453 hsa-miR-4436b-3p 1 0 0
chrX:47202184|47202453 hsa-miR-4723-5p -12 1 0
chrX:47202184|47202453 hsa-miR-3940-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6856-5p -12 1 0
chrX:47202184|47202453 hsa-miR-1285-3p 1 0 0
chrX:47202184|47202453 hsa-miR-3116 -9 1 0
chrX:47202184|47202453 hsa-miR-6785-5p 1 0 0
chrX:47202184|47202453 hsa-miR-6792-3p 0 1 0
chrX:47202184|47202453 hsa-miR-4690-3p -13 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:47202184|47202453
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MVASLAEPDFVVTDFAKFSRPAQLHIGFQA
Nucleotide Sequence TTGGTGGCCTCACTGGCAGAACCTGACTTTGTGGTGACGGACTTCGCCAAGTTTTCTCGCCCTGCCCAGCTGCACATTGGCTTCCAGGCC
CircID chrX:47202184|47202453
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MEANVQLGRARKLGEVRHHKVRFCQ
Nucleotide Sequence CTGGAAGCCAATGTGCAGCTGGGCAGGGCGAGAAAACTTGGCGAAGTCCGTCACCACAAAGTCAGGTTCTGCCAGTGA
CircID chrX:47202184|47202453
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MCSWAGRENLAKSVTTKSGSASEATKDFCGGGRGHQNQKRGMEN
Nucleotide Sequence ATGTGCAGCTGGGCAGGGCGAGAAAACTTGGCGAAGTCCGTCACCACAAAGTCAGGTTCTGCCAGTGAGGCCACCAAGGATTTCTGTGGCGGGGGGAGAGGTCATCAGAACCAGAAGAGAGGAATGGAGAACTAG
CircID chrX:47202184|47202453
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MPVRPPRISVAGGEVIRTRREEWRTRECLEPPPTAH
Nucleotide Sequence CTGCCAGTGAGGCCACCAAGGATTTCTGTGGCGGGGGGAGAGGTCATCAGAACCAGAAGAGAGGAATGGAGAACTAGGGAATGCCTAGAACCACCCCCCACAGCCCACTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab