CircRNA Information

General Information
circRNA Basic Information
CircID chrX:47247161|47247358
Strand -
CircType exon
Host Gene ENSG00000102226.8;
Algorism CIRI2;
Sequence GCTTTTCCTACACCAAGTTCTCCCGAGAGAAGCTGGACACCCTCGTGGAGTTTCCTATCCGGTCAGGGGCCAGGGAGAGGATGGCTGGGGGAAGGCAGGGAAAGGAGGGGGTGTACCAGTATTAACCCTCTCCCCACCCACAGGGACCTGGACTTCTCTGAGTTTGTCATCCAGCCACAGAATGAGTCGAATCCGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:47247161|47247358 hsa-miR-198 0 0 1
chrX:47247161|47247358 hsa-miR-200b-5p 0 0 1
chrX:47247161|47247358 hsa-miR-200b-3p 0 0 1
chrX:47247161|47247358 hsa-miR-146a-5p 0 0 1
chrX:47247161|47247358 hsa-miR-146a-3p 0 0 1
chrX:47247161|47247358 hsa-miR-200c-5p 0 0 1
chrX:47247161|47247358 hsa-miR-200c-3p 0 0 1
chrX:47247161|47247358 hsa-miR-429 0 0 1
chrX:47247161|47247358 hsa-miR-655-5p 0 0 1
chrX:47247161|47247358 hsa-miR-655-3p 0 0 1
chrX:47247161|47247358 hsa-miR-939-5p 0 0 1
chrX:47247161|47247358 hsa-miR-939-3p 0 0 1
chrX:47247161|47247358 hsa-miR-942-5p 0 0 1
chrX:47247161|47247358 hsa-miR-942-3p 0 0 1
chrX:47247161|47247358 hsa-miR-1287-5p 0 0 1
chrX:47247161|47247358 hsa-miR-1287-3p 0 0 1
chrX:47247161|47247358 hsa-miR-1293 0 0 1
chrX:47247161|47247358 hsa-miR-1255a 0 0 1
chrX:47247161|47247358 hsa-miR-491-5p 0 0 1
chrX:47247161|47247358 hsa-miR-339-5p 0 0 1
chrX:47247161|47247358 hsa-miR-361-3p 0 0 1
chrX:47247161|47247358 hsa-miR-146b-5p 0 0 1
chrX:47247161|47247358 hsa-miR-1274a 0 0 1
chrX:47247161|47247358 hsa-miR-1274b 0 0 1
chrX:47247161|47247358 hsa-miR-1255b 0 0 1
chrX:47247161|47247358 hsa-miR-5191 0 1 0
chrX:47247161|47247358 hsa-miR-134-5p 1 0 0
chrX:47247161|47247358 hsa-miR-6747-3p 0 1 0
chrX:47247161|47247358 hsa-miR-212-5p 0 1 0
chrX:47247161|47247358 hsa-miR-6892-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6804-5p 0 1 0
chrX:47247161|47247358 hsa-miR-6746-5p 0 1 0
chrX:47247161|47247358 hsa-miR-4474-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6759-5p 0 1 0
chrX:47247161|47247358 hsa-miR-7108-5p 1 0 0
chrX:47247161|47247358 hsa-miR-6748-5p 0 1 0
chrX:47247161|47247358 hsa-miR-7113-3p 0 1 0
chrX:47247161|47247358 hsa-miR-3679-3p 0 1 0
chrX:47247161|47247358 hsa-miR-3667-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6771-5p 0 1 0
chrX:47247161|47247358 hsa-miR-7111-3p 0 1 0
chrX:47247161|47247358 hsa-miR-4743-5p 1 0 0
chrX:47247161|47247358 hsa-miR-5196-3p 0 1 0
chrX:47247161|47247358 hsa-miR-4667-3p 0 1 0
chrX:47247161|47247358 hsa-miR-4446-5p 1 1 0
chrX:47247161|47247358 hsa-miR-4640-3p 1 1 0
chrX:47247161|47247358 hsa-miR-6786-3p 1 0 0
chrX:47247161|47247358 hsa-miR-6887-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6826-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6734-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6769b-5p 0 1 0
chrX:47247161|47247358 hsa-miR-6756-5p 0 1 0
chrX:47247161|47247358 hsa-miR-30c-1-3p 0 1 0
chrX:47247161|47247358 hsa-miR-6731-5p 0 1 0
chrX:47247161|47247358 hsa-miR-6785-5p 0 1 0
chrX:47247161|47247358 hsa-miR-6756-3p 0 1 0
chrX:47247161|47247358 hsa-miR-4768-5p 0 1 0
chrX:47247161|47247358 hsa-miR-5195-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:47247161|47247358
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MGEGRERRGCTSINPLPTHRDLDFSEFVIQPQNESNPE
Nucleotide Sequence CTGGGGGAAGGCAGGGAAAGGAGGGGGTGTACCAGTATTAACCCTCTCCCCACCCACAGGGACCTGGACTTCTCTGAGTTTGTCATCCAGCCACAGAATGAGTCGAATCCGGAG
CircID chrX:47247161|47247358
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MDTLVEFPIRSGARERMAGGRQGKEGVYQY
Nucleotide Sequence CTGGACACCCTCGTGGAGTTTCCTATCCGGTCAGGGGCCAGGGAGAGGATGGCTGGGGGAAGGCAGGGAAAGGAGGGGGTGTACCAGTATTAA
CircID chrX:47247161|47247358
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MWLDDKLREVQVPVGGERVNTGTPPPFPAFPQPSSPWPLTG
Nucleotide Sequence CTGTGGCTGGATGACAAACTCAGAGAAGTCCAGGTCCCTGTGGGTGGGGAGAGGGTTAATACTGGTACACCCCCTCCTTTCCCTGCCTTCCCCCAGCCATCCTCTCCCTGGCCCCTGACCGGATAG
CircID chrX:47247161|47247358
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence MTNSEKSRSLWVGRGLILVHPLLSLPSPSHPLPGP
Nucleotide Sequence ATGACAAACTCAGAGAAGTCCAGGTCCCTGTGGGTGGGGAGAGGGTTAATACTGGTACACCCCCTCCTTTCCCTGCCTTCCCCCAGCCATCCTCTCCCTGGCCCCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab