CircRNA Information

General Information
circRNA Basic Information
CircID chrX:47584943|47585296
Strand +
CircType exon
Host Gene ENSG00000102265.10;
Algorism CIRI2;
Sequence CTGTGGAAGTATCCGCAGACACTCTCCATGGCGGGGGTGTAGACGAACCGGATGTCAGCGGCATCCCCTAAGGCTTGGAACCCTTTATACATCTGTTGATGGATGAGGGGAAGTGTCTCTTTTACTGACATAATCCTCCCACTCCAGGTTCTTCCCTGAAGTCATATAGCATCCCAAGATCACAGCCAACTTTCTCGCACCAACCAGTGGCCAGAAGTTTCTGTTTTGACCAGGAGGAAGATGTTAGAAAATGCTGGGAAAGAGGCGGGGGCAGGGGATACCTTGGTCATCTTGATCTCATAACGCTGGTATAAGGTGGTCTGGTTGACTTCTGGTGTCCCCACGAACTTGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:47584943|47585296 hsa-miR-223-5p 0 0 1
chrX:47584943|47585296 hsa-miR-223-3p 0 0 1
chrX:47584943|47585296 hsa-miR-122-5p 0 0 1
chrX:47584943|47585296 hsa-miR-122-3p 0 0 1
chrX:47584943|47585296 hsa-miR-185-5p 0 0 1
chrX:47584943|47585296 hsa-miR-185-3p 0 0 1
chrX:47584943|47585296 hsa-miR-340-5p 0 0 1
chrX:47584943|47585296 hsa-miR-340-3p 0 0 1
chrX:47584943|47585296 hsa-miR-346 0 0 1
chrX:47584943|47585296 hsa-miR-489-5p 0 0 1
chrX:47584943|47585296 hsa-miR-489-3p 0 0 1
chrX:47584943|47585296 hsa-miR-568 0 0 1
chrX:47584943|47585296 hsa-miR-588 0 0 1
chrX:47584943|47585296 hsa-miR-617 0 0 1
chrX:47584943|47585296 hsa-miR-619-5p 0 0 1
chrX:47584943|47585296 hsa-miR-619-3p 0 0 1
chrX:47584943|47585296 hsa-miR-632 0 0 1
chrX:47584943|47585296 hsa-miR-634 0 0 1
chrX:47584943|47585296 hsa-miR-635 0 0 1
chrX:47584943|47585296 hsa-miR-647 0 0 1
chrX:47584943|47585296 hsa-miR-421 0 1 1
chrX:47584943|47585296 hsa-miR-1323 0 0 1
chrX:47584943|47585296 hsa-miR-675-5p 0 0 1
chrX:47584943|47585296 hsa-miR-675-3p 0 0 1
chrX:47584943|47585296 hsa-miR-548o-3p 0 0 1
chrX:47584943|47585296 hsa-miR-548o 0 0 1
chrX:47584943|47585296 hsa-miR-491-5p 0 0 1
chrX:47584943|47585296 hsa-miR-142-5p 0 0 1
chrX:47584943|47585296 hsa-miR-490-3p 0 0 1
chrX:47584943|47585296 hsa-miR-671-3p 0 1 1
chrX:47584943|47585296 hsa-miR-331-3p 0 0 1
chrX:47584943|47585296 hsa-miR-576-5p 0 0 1
chrX:47584943|47585296 hsa-miR-338-3p 0 0 1
chrX:47584943|47585296 hsa-miR-324-3p 0 0 1
chrX:47584943|47585296 hsa-miR-769-3p 0 0 1
chrX:47584943|47585296 hsa-miR-450b-3p 0 0 1
chrX:47584943|47585296 hsa-miR-548b-3p 0 0 1
chrX:47584943|47585296 hsa-miR-1259 0 0 1
chrX:47584943|47585296 hsa-miR-608 1 0 0
chrX:47584943|47585296 hsa-miR-1913 0 1 0
chrX:47584943|47585296 hsa-miR-4270 1 0 0
chrX:47584943|47585296 hsa-miR-4271 1 0 0
chrX:47584943|47585296 hsa-miR-4525 1 0 0
chrX:47584943|47585296 hsa-miR-4651 1 0 0
chrX:47584943|47585296 hsa-miR-4675 1 0 0
chrX:47584943|47585296 hsa-miR-4739 1 0 0
chrX:47584943|47585296 hsa-miR-5192 0 1 0
chrX:47584943|47585296 hsa-miR-6133 1 0 0
chrX:47584943|47585296 hsa-miR-7974 1 1 0
chrX:47584943|47585296 hsa-miR-9899 1 0 0
chrX:47584943|47585296 hsa-miR-12128 0 1 0
chrX:47584943|47585296 hsa-miR-4433b-3p 1 0 0
chrX:47584943|47585296 hsa-miR-6734-5p 1 0 0
chrX:47584943|47585296 hsa-miR-4433a-3p 1 0 0
chrX:47584943|47585296 hsa-miR-6728-5p 1 1 0
chrX:47584943|47585296 hsa-miR-6804-5p 0 1 0
chrX:47584943|47585296 hsa-miR-3192-5p 1 0 0
chrX:47584943|47585296 hsa-miR-7160-5p 1 0 0
chrX:47584943|47585296 hsa-miR-23b-5p 0 1 0
chrX:47584943|47585296 hsa-miR-4728-3p 1 0 0
chrX:47584943|47585296 hsa-miR-6783-5p 1 0 0
chrX:47584943|47585296 hsa-miR-23a-5p 0 1 0
chrX:47584943|47585296 hsa-miR-6782-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6810-5p 0 1 0
chrX:47584943|47585296 hsa-miR-30b-3p 1 1 0
chrX:47584943|47585296 hsa-miR-7109-5p 1 0 0
chrX:47584943|47585296 hsa-miR-3127-5p 1 0 0
chrX:47584943|47585296 hsa-miR-4787-5p 1 0 0
chrX:47584943|47585296 hsa-miR-4715-5p 0 1 0
chrX:47584943|47585296 hsa-miR-6743-3p 1 0 0
chrX:47584943|47585296 hsa-miR-6804-3p 1 0 0
chrX:47584943|47585296 hsa-miR-6752-3p 0 1 0
chrX:47584943|47585296 hsa-miR-130b-5p 0 1 0
chrX:47584943|47585296 hsa-miR-6748-3p 0 1 0
chrX:47584943|47585296 hsa-miR-1233-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6769b-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6778-5p 1 1 0
chrX:47584943|47585296 hsa-miR-6812-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6752-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6754-5p 1 0 0
chrX:47584943|47585296 hsa-miR-11181-3p 1 0 0
chrX:47584943|47585296 hsa-miR-6751-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6763-5p 0 1 0
chrX:47584943|47585296 hsa-miR-6774-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6780a-5p 0 1 0
chrX:47584943|47585296 hsa-miR-7111-5p 1 0 0
chrX:47584943|47585296 hsa-miR-4728-5p 1 0 0
chrX:47584943|47585296 hsa-miR-5196-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6780b-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6795-5p 1 0 0
chrX:47584943|47585296 hsa-miR-6887-5p 1 0 0
chrX:47584943|47585296 hsa-miR-939-5p 1 0 0
chrX:47584943|47585296 hsa-miR-3679-5p 1 0 0
chrX:47584943|47585296 hsa-miR-4646-5p 1 0 0
chrX:47584943|47585296 hsa-miR-2682-3p 0 1 0
chrX:47584943|47585296 hsa-miR-6801-3p 0 1 0
chrX:47584943|47585296 hsa-miR-6810-3p 0 1 0
chrX:47584943|47585296 hsa-miR-6781-3p 0 1 0
chrX:47584943|47585296 hsa-miR-6814-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:47584943|47585296
ORF Type ORF1
Protein Length 25
Nucleotide Length 78
Protein Sequence MTRRKMLENAGKEAGAGDTLVILIS
Nucleotide Sequence TTGACCAGGAGGAAGATGTTAGAAAATGCTGGGAAAGAGGCGGGGGCAGGGGATACCTTGGTCATCTTGATCTCATAA
CircID chrX:47584943|47585296
ORF Type ORF2
Protein Length 52
Nucleotide Length 159
Protein Sequence MKSYSIPRSQPTFSHQPVARSFCFDQEEDVRKCWERGGGRGYLGHLDLITLV
Nucleotide Sequence CTGAAGTCATATAGCATCCCAAGATCACAGCCAACTTTCTCGCACCAACCAGTGGCCAGAAGTTTCTGTTTTGACCAGGAGGAAGATGTTAGAAAATGCTGGGAAAGAGGCGGGGGCAGGGGATACCTTGGTCATCTTGATCTCATAACGCTGGTATAA
CircID chrX:47584943|47585296
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MVGARKLAVILGCYMTSGKNLEWEDYVSKRDTSPHPSTDV
Nucleotide Sequence CTGGTTGGTGCGAGAAAGTTGGCTGTGATCTTGGGATGCTATATGACTTCAGGGAAGAACCTGGAGTGGGAGGATTATGTCAGTAAAAGAGACACTTCCCCTCATCCATCAACAGATGTATAA
CircID chrX:47584943|47585296
ORF Type ORF4
Protein Length 36
Nucleotide Length 111
Protein Sequence MTKVSPAPASFPAFSNIFLLVKTETSGHWLVRESWL
Nucleotide Sequence ATGACCAAGGTATCCCCTGCCCCCGCCTCTTTCCCAGCATTTTCTAACATCTTCCTCCTGGTCAAAACAGAAACTTCTGGCCACTGGTTGGTGCGAGAAAGTTGGCTGTGA
CircID chrX:47584943|47585296
ORF Type ORF5
Protein Length 43
Nucleotide Length 129
Protein Sequence MSVKETLPLIHQQMYKGFQALGDAADIRFVYTPAMESVCGYFH
Nucleotide Sequence ATGTCAGTAAAAGAGACACTTCCCCTCATCCATCAACAGATGTATAAAGGGTTCCAAGCCTTAGGGGATGCCGCTGACATCCGGTTCGTCTACACCCCCGCCATGGAGAGTGTCTGCGGATACTTCCAC
CircID chrX:47584943|47585296
ORF Type ORF6
Protein Length 50
Nucleotide Length 153
Protein Sequence MPPPLSQHFLTSSSWSKQKLLATGWCEKVGCDLGMLYDFREEPGVGGLCQ
Nucleotide Sequence CTGCCCCCGCCTCTTTCCCAGCATTTTCTAACATCTTCCTCCTGGTCAAAACAGAAACTTCTGGCCACTGGTTGGTGCGAGAAAGTTGGCTGTGATCTTGGGATGCTATATGACTTCAGGGAAGAACCTGGAGTGGGAGGATTATGTCAGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab