CircRNA Information

General Information
circRNA Basic Information
CircID chrX:47585259|47585639
Strand -
CircType exon
Host Gene ENSG00000102265.10;
Algorism CIRI2;
Sequence ACCCCCGCCATGGAGAGTGTCTGCGGATACTTCCACAGGTCCCACAACCGCAGCGAGGAGTTTCTCATTGCTGGTGAGGCACCGTCCCCGCGCCCTGTGCCACACCAACCAGTCCCTGGGGCGCGGCCTAGCAACCACGAGGGGGCGAGGCTCTGATGGGAATGGTCCCACTGGAAATGGGGACCACCCCAATTTCAGTCTATCAGAAGGCCGGGCCTTTGGCAGCTTGGCAGCTCAGCCAATCACAAGCTGCTTGTCGGTCCCCGCCCCGCCTTTCTCCTTAGGAAAACTGCAGGATGGACTCTTGCACATCACTACCTGCAGTTTTGTGGCTCCCTGGAACAGCCTGAGCTTAGCTCAGCGCCGGGGCTTCACCAAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:47585259|47585639 hsa-miR-19a-5p 0 0 1
chrX:47585259|47585639 hsa-miR-19a-3p 0 0 1
chrX:47585259|47585639 hsa-miR-22-5p 0 0 1
chrX:47585259|47585639 hsa-miR-22-3p 0 0 1
chrX:47585259|47585639 hsa-miR-136-5p 0 0 1
chrX:47585259|47585639 hsa-miR-136-3p 0 0 1
chrX:47585259|47585639 hsa-miR-384 0 0 1
chrX:47585259|47585639 hsa-miR-196b-5p 0 0 1
chrX:47585259|47585639 hsa-miR-196b-3p 0 0 1
chrX:47585259|47585639 hsa-miR-484 0 0 1
chrX:47585259|47585639 hsa-miR-492 0 1 1
chrX:47585259|47585639 hsa-miR-539-5p 0 0 1
chrX:47585259|47585639 hsa-miR-539-3p 0 0 1
chrX:47585259|47585639 hsa-miR-558 0 1 1
chrX:47585259|47585639 hsa-miR-608 0 0 1
chrX:47585259|47585639 hsa-miR-610 0 1 1
chrX:47585259|47585639 hsa-miR-634 0 0 1
chrX:47585259|47585639 hsa-miR-639 1 1 1
chrX:47585259|47585639 hsa-miR-646 0 0 1
chrX:47585259|47585639 hsa-miR-647 0 0 1
chrX:47585259|47585639 hsa-miR-657 0 0 1
chrX:47585259|47585639 hsa-miR-1323 0 0 1
chrX:47585259|47585639 hsa-miR-744-5p 0 0 1
chrX:47585259|47585639 hsa-miR-744-3p 0 0 1
chrX:47585259|47585639 hsa-miR-1226-5p 0 0 1
chrX:47585259|47585639 hsa-miR-1226-3p 0 0 1
chrX:47585259|47585639 hsa-miR-1237-5p 0 0 1
chrX:47585259|47585639 hsa-miR-1237-3p 0 0 1
chrX:47585259|47585639 hsa-miR-1205 0 0 1
chrX:47585259|47585639 hsa-miR-548e-5p 0 0 1
chrX:47585259|47585639 hsa-miR-548e-3p 0 0 1
chrX:47585259|47585639 hsa-miR-1293 0 0 1
chrX:47585259|47585639 hsa-miR-548o-3p 0 0 1
chrX:47585259|47585639 hsa-miR-1825 0 0 1
chrX:47585259|47585639 hsa-miR-548o 0 0 1
chrX:47585259|47585639 hsa-miR-145-5p 0 0 1
chrX:47585259|47585639 hsa-miR-199a-5p 0 0 1
chrX:47585259|47585639 hsa-miR-509-3p 0 0 1
chrX:47585259|47585639 hsa-miR-199b-5p 0 0 1
chrX:47585259|47585639 hsa-miR-342-5p 0 0 1
chrX:47585259|47585639 hsa-miR-509-3-5p 0 0 1
chrX:47585259|47585639 hsa-miR-509-5p 0 1 1
chrX:47585259|47585639 hsa-miR-548a-3p 0 0 1
chrX:47585259|47585639 hsa-miR-323-5p 0 0 1
chrX:47585259|47585639 hsa-miR-220c 0 0 1
chrX:47585259|47585639 hsa-miR-644 0 0 1
chrX:47585259|47585639 hsa-miR-548f 0 0 1
chrX:47585259|47585639 hsa-miR-19b 0 0 1
chrX:47585259|47585639 hsa-miR-720 0 0 1
chrX:47585259|47585639 hsa-miR-196a 0 0 1
chrX:47585259|47585639 hsa-miR-1295 0 0 1
chrX:47585259|47585639 hsa-miR-663 0 0 1
chrX:47585259|47585639 hsa-miR-151-3p 0 0 1
chrX:47585259|47585639 hsa-miR-1245 0 0 1
chrX:47585259|47585639 hsa-miR-638 1 0 0
chrX:47585259|47585639 hsa-miR-663a 1 1 0
chrX:47585259|47585639 hsa-miR-762 1 0 0
chrX:47585259|47585639 hsa-miR-920 0 1 0
chrX:47585259|47585639 hsa-miR-1183 1 1 0
chrX:47585259|47585639 hsa-miR-1295a 0 1 0
chrX:47585259|47585639 hsa-miR-1538 0 1 0
chrX:47585259|47585639 hsa-miR-3131 1 0 0
chrX:47585259|47585639 hsa-miR-3166 0 1 0
chrX:47585259|47585639 hsa-miR-4270 1 1 0
chrX:47585259|47585639 hsa-miR-3649 0 1 0
chrX:47585259|47585639 hsa-miR-4449 0 1 0
chrX:47585259|47585639 hsa-miR-4484 0 1 0
chrX:47585259|47585639 hsa-miR-4488 1 0 0
chrX:47585259|47585639 hsa-miR-4516 1 0 0
chrX:47585259|47585639 hsa-miR-4538 1 0 0
chrX:47585259|47585639 hsa-miR-4654 1 1 0
chrX:47585259|47585639 hsa-miR-4657 0 1 0
chrX:47585259|47585639 hsa-miR-4663 0 1 0
chrX:47585259|47585639 hsa-miR-4689 1 1 0
chrX:47585259|47585639 hsa-miR-4706 1 1 0
chrX:47585259|47585639 hsa-miR-4784 1 0 0
chrX:47585259|47585639 hsa-miR-6085 1 0 0
chrX:47585259|47585639 hsa-miR-6125 1 0 0
chrX:47585259|47585639 hsa-miR-8070 0 1 0
chrX:47585259|47585639 hsa-miR-12118 1 0 0
chrX:47585259|47585639 hsa-miR-211-3p 1 0 0
chrX:47585259|47585639 hsa-miR-150-3p 0 1 0
chrX:47585259|47585639 hsa-miR-4747-3p 0 1 0
chrX:47585259|47585639 hsa-miR-4687-3p 0 1 0
chrX:47585259|47585639 hsa-miR-6854-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6833-5p 0 1 0
chrX:47585259|47585639 hsa-miR-505-5p 0 1 0
chrX:47585259|47585639 hsa-miR-4655-5p 1 0 0
chrX:47585259|47585639 hsa-miR-3189-5p 1 0 0
chrX:47585259|47585639 hsa-miR-7845-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6845-3p 1 0 0
chrX:47585259|47585639 hsa-miR-3180-3p 0 1 0
chrX:47585259|47585639 hsa-miR-4655-3p 1 0 0
chrX:47585259|47585639 hsa-miR-3190-3p 0 1 0
chrX:47585259|47585639 hsa-miR-6827-5p 1 1 0
chrX:47585259|47585639 hsa-miR-3934-3p 0 1 0
chrX:47585259|47585639 hsa-miR-4793-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6784-5p 1 0 0
chrX:47585259|47585639 hsa-miR-1908-5p 1 1 0
chrX:47585259|47585639 hsa-miR-6834-5p 1 0 0
chrX:47585259|47585639 hsa-miR-3162-5p 1 1 0
chrX:47585259|47585639 hsa-miR-194-3p 0 1 0
chrX:47585259|47585639 hsa-miR-3191-3p 0 1 0
chrX:47585259|47585639 hsa-miR-4707-5p 1 1 0
chrX:47585259|47585639 hsa-miR-4652-5p 0 1 0
chrX:47585259|47585639 hsa-miR-7113-5p 0 1 0
chrX:47585259|47585639 hsa-miR-1292-3p 0 1 0
chrX:47585259|47585639 hsa-miR-2277-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6767-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6768-3p 0 1 0
chrX:47585259|47585639 hsa-miR-3184-3p 1 0 0
chrX:47585259|47585639 hsa-miR-3144-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6787-5p 1 1 0
chrX:47585259|47585639 hsa-miR-6816-5p 0 1 0
chrX:47585259|47585639 hsa-miR-3180 0 1 0
chrX:47585259|47585639 hsa-miR-6726-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6737-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6743-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6754-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6756-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6813-5p 1 0 0
chrX:47585259|47585639 hsa-miR-10401-5p 1 0 0
chrX:47585259|47585639 hsa-miR-4755-5p 0 1 0
chrX:47585259|47585639 hsa-miR-10396a-5p 0 1 0
chrX:47585259|47585639 hsa-miR-10396b-5p 0 1 0
chrX:47585259|47585639 hsa-miR-1909-3p 1 0 0
chrX:47585259|47585639 hsa-miR-4649-5p 1 0 0
chrX:47585259|47585639 hsa-miR-4685-5p 1 0 0
chrX:47585259|47585639 hsa-miR-4745-3p 0 1 0
chrX:47585259|47585639 hsa-miR-4749-5p 1 1 0
chrX:47585259|47585639 hsa-miR-6729-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6777-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6858-5p 1 0 0
chrX:47585259|47585639 hsa-miR-10394-3p 1 1 0
chrX:47585259|47585639 hsa-miR-1266-5p 1 0 0
chrX:47585259|47585639 hsa-miR-6511a-5p 1 0 0
chrX:47585259|47585639 hsa-miR-3529-5p 0 1 0
chrX:47585259|47585639 hsa-miR-10401-3p 1 1 0
chrX:47585259|47585639 hsa-miR-6819-3p 1 0 0
chrX:47585259|47585639 hsa-miR-6823-3p 0 1 0
chrX:47585259|47585639 hsa-miR-10394-5p 0 1 0
chrX:47585259|47585639 hsa-miR-6764-5p 0 1 0
chrX:47585259|47585639 hsa-miR-450b-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:47585259|47585639
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence MESVCGYFHRSHNRSEEFLIAGEAPSPRPVPHQPVPGARPSNHEGARL
Nucleotide Sequence ATGGAGAGTGTCTGCGGATACTTCCACAGGTCCCACAACCGCAGCGAGGAGTTTCTCATTGCTGGTGAGGCACCGTCCCCGCGCCCTGTGCCACACCAACCAGTCCCTGGGGCGCGGCCTAGCAACCACGAGGGGGCGAGGCTCTGA
CircID chrX:47585259|47585639
ORF Type ORF2
Protein Length 44
Nucleotide Length 132
Protein Sequence MLVGPRPAFLLRKTAGWTLAHHYLQFCGSLEQPELSSAPGLHQD
Nucleotide Sequence CTGCTTGTCGGTCCCCGCCCCGCCTTTCTCCTTAGGAAAACTGCAGGATGGACTCTTGCACATCACTACCTGCAGTTTTGTGGCTCCCTGGAACAGCCTGAGCTTAGCTCAGCGCCGGGGCTTCACCAAGAC
CircID chrX:47585259|47585639
ORF Type ORF3
Protein Length 104
Nucleotide Length 312
Protein Sequence MLVRHRPRALCHTNQSLGRGLATTRGRGSDGNGPTGNGDHPNFSLSEGRAFGSLAAQPITSCLSVPAPPFSLGKLQDGLLHITTCSFVAPWNSLSLAQRRGFTK
Nucleotide Sequence TTGCTGGTGAGGCACCGTCCCCGCGCCCTGTGCCACACCAACCAGTCCCTGGGGCGCGGCCTAGCAACCACGAGGGGGCGAGGCTCTGATGGGAATGGTCCCACTGGAAATGGGGACCACCCCAATTTCAGTCTATCAGAAGGCCGGGCCTTTGGCAGCTTGGCAGCTCAGCCAATCACAAGCTGCTTGTCGGTCCCCGCCCCGCCTTTCTCCTTAGGAAAACTGCAGGATGGACTCTTGCACATCACTACCTGCAGTTTTGTGGCTCCCTGGAACAGCCTGAGCTTAGCTCAGCGCCGGGGCTTCACCAAG
CircID chrX:47585259|47585639
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MMGMVPLEMGTTPISVYQKAGPLAAWQLSQSQAACRSPPRLSP
Nucleotide Sequence CTGATGGGAATGGTCCCACTGGAAATGGGGACCACCCCAATTTCAGTCTATCAGAAGGCCGGGCCTTTGGCAGCTTGGCAGCTCAGCCAATCACAAGCTGCTTGTCGGTCCCCGCCCCGCCTTTCTCCTTAG
CircID chrX:47585259|47585639
ORF Type ORF5
Protein Length 36
Nucleotide Length 111
Protein Sequence MFQGATKLQVVMCKSPSCSFPKEKGGAGTDKQLVIG
Nucleotide Sequence CTGTTCCAGGGAGCCACAAAACTGCAGGTAGTGATGTGCAAGAGTCCATCCTGCAGTTTTCCTAAGGAGAAAGGCGGGGCGGGGACCGACAAGCAGCTTGTGATTGGCTGA
CircID chrX:47585259|47585639
ORF Type ORF6
Protein Length 75
Nucleotide Length 225
Protein Sequence MPKARPSDRLKLGWSPFPVGPFPSEPRPLVVARPRPRDWLVWHRARGRCLTSNEKLLAAVVGPVEVSADTLHGGG
Nucleotide Sequence CTGCCAAAGGCCCGGCCTTCTGATAGACTGAAATTGGGGTGGTCCCCATTTCCAGTGGGACCATTCCCATCAGAGCCTCGCCCCCTCGTGGTTGCTAGGCCGCGCCCCAGGGACTGGTTGGTGTGGCACAGGGCGCGGGGACGGTGCCTCACCAGCAATGAGAAACTCCTCGCTGCGGTTGTGGGACCTGTGGAAGTATCCGCAGACACTCTCCATGGCGGGGGT
CircID chrX:47585259|47585639
ORF Type ORF7
Protein Length 44
Nucleotide Length 132
Protein Sequence MLGRAPGTGWCGTGRGDGASPAMRNSSLRLWDLWKYPQTLSMAG
Nucleotide Sequence TTGCTAGGCCGCGCCCCAGGGACTGGTTGGTGTGGCACAGGGCGCGGGGACGGTGCCTCACCAGCAATGAGAAACTCCTCGCTGCGGTTGTGGGACCTGTGGAAGTATCCGCAGACACTCTCCATGGCGGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab