CircRNA Information

General Information
circRNA Basic Information
CircID chrX:48478449|48478707
Strand +
CircType exon
Host Gene ENSG00000068438.13;
Algorism CIRI2;
Sequence CTGGGTGATGTCCCCCTGGATCTGTACCACACCTGGTAGTGGAGCCATAGCCTGCAGGTCCACAGCCACCACGTGGCCGGACCCTTGGCCCCTGTGGACAACATGGCCCACATCAGCCTAGTTTCGCTCCCGGGCCCCTCCCACCCAGCCGGCCCTCCTGGGTCTCCCATCTGGGACCCCCACACTTACCCGATCTTCTGGCTCAGCACCTGGCTCCAGCTGCCTGGGGCTGCACACAGGTCAACTGCCCGTGTCACGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:48478449|48478707 hsa-miR-192-5p 0 0 1
chrX:48478449|48478707 hsa-miR-192-3p 0 0 1
chrX:48478449|48478707 hsa-miR-215-5p 0 0 1
chrX:48478449|48478707 hsa-miR-215-3p 0 0 1
chrX:48478449|48478707 hsa-miR-135b-5p 0 0 1
chrX:48478449|48478707 hsa-miR-135b-3p 0 0 1
chrX:48478449|48478707 hsa-miR-492 0 1 1
chrX:48478449|48478707 hsa-miR-555 0 0 1
chrX:48478449|48478707 hsa-miR-595 0 0 1
chrX:48478449|48478707 hsa-miR-602 1 0 1
chrX:48478449|48478707 hsa-miR-631 0 0 1
chrX:48478449|48478707 hsa-miR-645 0 1 1
chrX:48478449|48478707 hsa-miR-665 0 0 1
chrX:48478449|48478707 hsa-miR-1205 0 1 1
chrX:48478449|48478707 hsa-miR-1293 0 0 1
chrX:48478449|48478707 hsa-miR-491-5p 0 0 1
chrX:48478449|48478707 hsa-miR-615-5p 0 1 1
chrX:48478449|48478707 hsa-miR-299-3p 0 0 1
chrX:48478449|48478707 hsa-miR-423-5p 1 1 1
chrX:48478449|48478707 hsa-miR-1207-3p 0 0 1
chrX:48478449|48478707 hsa-miR-220c 0 0 1
chrX:48478449|48478707 hsa-miR-135a 0 0 1
chrX:48478449|48478707 hsa-miR-499-3p 0 0 1
chrX:48478449|48478707 hsa-miR-762 1 0 0
chrX:48478449|48478707 hsa-miR-1203 1 0 0
chrX:48478449|48478707 hsa-miR-1538 1 0 0
chrX:48478449|48478707 hsa-miR-2861 1 0 0
chrX:48478449|48478707 hsa-miR-3196 1 0 0
chrX:48478449|48478707 hsa-miR-4259 1 0 0
chrX:48478449|48478707 hsa-miR-3929 0 1 0
chrX:48478449|48478707 hsa-miR-3937 0 1 0
chrX:48478449|48478707 hsa-miR-3135b 1 1 0
chrX:48478449|48478707 hsa-miR-4462 1 1 0
chrX:48478449|48478707 hsa-miR-4505 1 1 0
chrX:48478449|48478707 hsa-miR-4507 1 0 0
chrX:48478449|48478707 hsa-miR-1587 1 0 0
chrX:48478449|48478707 hsa-miR-4651 1 0 0
chrX:48478449|48478707 hsa-miR-4656 1 0 0
chrX:48478449|48478707 hsa-miR-4658 1 0 0
chrX:48478449|48478707 hsa-miR-4673 0 1 0
chrX:48478449|48478707 hsa-miR-4674 1 0 0
chrX:48478449|48478707 hsa-miR-4692 0 1 0
chrX:48478449|48478707 hsa-miR-4741 1 0 0
chrX:48478449|48478707 hsa-miR-4752 0 1 0
chrX:48478449|48478707 hsa-miR-5787 1 1 0
chrX:48478449|48478707 hsa-miR-6069 1 0 0
chrX:48478449|48478707 hsa-miR-6085 1 1 0
chrX:48478449|48478707 hsa-miR-6090 1 0 0
chrX:48478449|48478707 hsa-miR-6745 1 0 0
chrX:48478449|48478707 hsa-miR-7974 0 1 0
chrX:48478449|48478707 hsa-miR-8077 1 0 0
chrX:48478449|48478707 hsa-miR-8089 1 0 0
chrX:48478449|48478707 hsa-miR-150-3p 1 1 0
chrX:48478449|48478707 hsa-miR-93-3p 1 0 0
chrX:48478449|48478707 hsa-miR-1247-3p 1 1 0
chrX:48478449|48478707 hsa-miR-671-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6861-5p 1 0 0
chrX:48478449|48478707 hsa-miR-219a-1-3p 1 0 0
chrX:48478449|48478707 hsa-miR-3622a-5p 1 0 0
chrX:48478449|48478707 hsa-miR-3934-5p 0 1 0
chrX:48478449|48478707 hsa-miR-1227-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6089 1 0 0
chrX:48478449|48478707 hsa-miR-6807-5p 1 1 0
chrX:48478449|48478707 hsa-miR-4722-5p 1 1 0
chrX:48478449|48478707 hsa-miR-505-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6741-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6776-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6742-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6871-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6748-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6796-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6881-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6782-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6850-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6786-5p 1 0 0
chrX:48478449|48478707 hsa-miR-1229-5p 1 0 0
chrX:48478449|48478707 hsa-miR-548au-3p 0 1 0
chrX:48478449|48478707 hsa-miR-4640-5p 1 0 0
chrX:48478449|48478707 hsa-miR-1228-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6771-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4717-3p 1 0 0
chrX:48478449|48478707 hsa-miR-6749-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4743-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4446-3p 1 0 0
chrX:48478449|48478707 hsa-miR-149-3p 1 1 0
chrX:48478449|48478707 hsa-miR-937-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6789-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6802-5p 1 0 0
chrX:48478449|48478707 hsa-miR-7156-3p 0 1 0
chrX:48478449|48478707 hsa-miR-6781-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6877-5p 1 0 0
chrX:48478449|48478707 hsa-miR-7112-5p 1 1 0
chrX:48478449|48478707 hsa-miR-1225-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6508-3p 0 1 0
chrX:48478449|48478707 hsa-miR-7844-5p 1 1 0
chrX:48478449|48478707 hsa-miR-1233-5p 1 1 0
chrX:48478449|48478707 hsa-miR-1273h-5p 0 1 0
chrX:48478449|48478707 hsa-miR-4763-3p 1 0 0
chrX:48478449|48478707 hsa-miR-6769b-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6778-5p 1 1 0
chrX:48478449|48478707 hsa-miR-6787-5p 1 0 0
chrX:48478449|48478707 hsa-miR-5001-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6726-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6737-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6743-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6752-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6754-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6756-5p 1 1 0
chrX:48478449|48478707 hsa-miR-6769a-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6803-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6813-5p 1 1 0
chrX:48478449|48478707 hsa-miR-6819-5p 1 0 0
chrX:48478449|48478707 hsa-miR-7107-5p 1 0 0
chrX:48478449|48478707 hsa-miR-10401-5p 1 0 0
chrX:48478449|48478707 hsa-miR-1249-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6722-3p 1 1 0
chrX:48478449|48478707 hsa-miR-6751-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6779-5p 1 1 0
chrX:48478449|48478707 hsa-miR-6797-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6879-5p 1 0 0
chrX:48478449|48478707 hsa-miR-3620-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4728-5p 1 1 0
chrX:48478449|48478707 hsa-miR-10396b-5p 1 0 0
chrX:48478449|48478707 hsa-miR-1909-3p 1 0 0
chrX:48478449|48478707 hsa-miR-328-5p 1 0 0
chrX:48478449|48478707 hsa-miR-449c-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4649-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4726-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4745-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6729-5p 1 0 0
chrX:48478449|48478707 hsa-miR-675-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6795-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6848-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6858-5p 1 0 0
chrX:48478449|48478707 hsa-miR-939-5p 1 0 0
chrX:48478449|48478707 hsa-miR-4758-5p 1 0 0
chrX:48478449|48478707 hsa-miR-3940-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6773-5p 0 1 0
chrX:48478449|48478707 hsa-miR-1914-3p 1 0 0
chrX:48478449|48478707 hsa-miR-4665-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6766-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6785-5p 1 1 0
chrX:48478449|48478707 hsa-miR-3184-5p 0 1 0
chrX:48478449|48478707 hsa-miR-6724-5p 1 0 0
chrX:48478449|48478707 hsa-miR-6762-5p 1 1 0
chrX:48478449|48478707 hsa-miR-10394-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:48478449|48478707
ORF Type ORF1
Protein Length 69
Nucleotide Length 207
Protein Sequence MQVHSHHVAGPLAPVDNMAHISLVSLPGPSHPAGPPGSPIWDPHTYPIFWLSTWLQLPGAAHRSTARVT
Nucleotide Sequence CTGCAGGTCCACAGCCACCACGTGGCCGGACCCTTGGCCCCTGTGGACAACATGGCCCACATCAGCCTAGTTTCGCTCCCGGGCCCCTCCCACCCAGCCGGCCCTCCTGGGTCTCCCATCTGGGACCCCCACACTTACCCGATCTTCTGGCTCAGCACCTGGCTCCAGCTGCCTGGGGCTGCACACAGGTCAACTGCCCGTGTCACG
CircID chrX:48478449|48478707
ORF Type ORF2
Protein Length 37
Nucleotide Length 114
Protein Sequence MSPWICTTPGSGAIACRSTATTWPDPWPLWTTWPTSA
Nucleotide Sequence ATGTCCCCCTGGATCTGTACCACACCTGGTAGTGGAGCCATAGCCTGCAGGTCCACAGCCACCACGTGGCCGGACCCTTGGCCCCTGTGGACAACATGGCCCACATCAGCCTAG
CircID chrX:48478449|48478707
ORF Type ORF3
Protein Length 34
Nucleotide Length 102
Protein Sequence MGLPSGTPTLTRSSGSAPGSSCLGLHTGQLPVSR
Nucleotide Sequence CTGGGTCTCCCATCTGGGACCCCCACACTTACCCGATCTTCTGGCTCAGCACCTGGCTCCAGCTGCCTGGGGCTGCACACAGGTCAACTGCCCGTGTCACGC
CircID chrX:48478449|48478707
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MGPPHLPDLLAQHLAPAAWGCTQVNCPCH
Nucleotide Sequence CTGGGACCCCCACACTTACCCGATCTTCTGGCTCAGCACCTGGCTCCAGCTGCCTGGGGCTGCACACAGGTCAACTGCCCGTGTCAC
CircID chrX:48478449|48478707
ORF Type ORF5
Protein Length 33
Nucleotide Length 102
Protein Sequence MEPGAEPEDRVSVGVPDGRPRRAGWVGGARERN
Nucleotide Sequence CTGGAGCCAGGTGCTGAGCCAGAAGATCGGGTAAGTGTGGGGGTCCCAGATGGGAGACCCAGGAGGGCCGGCTGGGTGGGAGGGGCCCGGGAGCGAAACTAG
CircID chrX:48478449|48478707
ORF Type ORF6
Protein Length 56
Nucleotide Length 168
Protein Sequence MGDPGGPAGWEGPGSETRLMWAMLSTGAKGPATWWLWTCRLWLHYQVWYRSRGTSP
Nucleotide Sequence ATGGGAGACCCAGGAGGGCCGGCTGGGTGGGAGGGGCCCGGGAGCGAAACTAGGCTGATGTGGGCCATGTTGTCCACAGGGGCCAAGGGTCCGGCCACGTGGTGGCTGTGGACCTGCAGGCTATGGCTCCACTACCAGGTGTGGTACAGATCCAGGGGGACATCACCC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab