CircRNA Information

General Information
circRNA Basic Information
CircID chrX:48575652|48575817
Strand +
CircType exon
Host Gene ENSG00000102317.16;
Algorism CIRI2;
Sequence CCCCTAGAACAAAAGGCAGTCATGCTCCTGTGAGTGGGCACTGCGGGGCTTGGTGGCCACGCTGCCCCGAGCAGACACAGAGGGAAAAACAAAAAGAATGAAGGAAGCCGCAGATGGGGACAAGGTCCCTCTGCAGATAGGAGGCCCCACCTCTCCGTTCATGGCT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:48575652|48575817 hsa-miR-205-5p 0 0 1
chrX:48575652|48575817 hsa-miR-205-3p 0 0 1
chrX:48575652|48575817 hsa-miR-375-5p 0 0 1
chrX:48575652|48575817 hsa-miR-375-3p 0 0 1
chrX:48575652|48575817 hsa-miR-346 0 0 1
chrX:48575652|48575817 hsa-miR-588 0 0 1
chrX:48575652|48575817 hsa-miR-632 0 0 1
chrX:48575652|48575817 hsa-miR-1298-5p 0 0 1
chrX:48575652|48575817 hsa-miR-1298-3p 0 0 1
chrX:48575652|48575817 hsa-miR-887-5p 0 0 1
chrX:48575652|48575817 hsa-miR-887-3p 0 0 1
chrX:48575652|48575817 hsa-miR-1204 0 0 1
chrX:48575652|48575817 hsa-miR-1205 0 0 1
chrX:48575652|48575817 hsa-miR-423-3p 0 0 1
chrX:48575652|48575817 hsa-miR-486-3p 0 0 1
chrX:48575652|48575817 hsa-miR-885-3p 0 0 1
chrX:48575652|48575817 hsa-miR-1184 0 0 1
chrX:48575652|48575817 hsa-miR-767-3p 0 0 1
chrX:48575652|48575817 hsa-miR-513a-5p 0 0 1
chrX:48575652|48575817 hsa-miR-516a-3p 0 0 1
chrX:48575652|48575817 hsa-miR-642 0 0 1
chrX:48575652|48575817 hsa-miR-220c 0 0 1
chrX:48575652|48575817 hsa-miR-612 1 0 0
chrX:48575652|48575817 hsa-miR-4469 1 0 0
chrX:48575652|48575817 hsa-miR-5090 0 1 0
chrX:48575652|48575817 hsa-miR-92a-2-5p 0 1 0
chrX:48575652|48575817 hsa-miR-6892-3p 1 0 0
chrX:48575652|48575817 hsa-miR-3677-5p 1 1 0
chrX:48575652|48575817 hsa-miR-6727-5p 1 1 0
chrX:48575652|48575817 hsa-miR-3189-5p 1 0 0
chrX:48575652|48575817 hsa-miR-6868-3p 1 1 0
chrX:48575652|48575817 hsa-miR-6786-5p 1 0 0
chrX:48575652|48575817 hsa-miR-1908-3p 1 0 0
chrX:48575652|48575817 hsa-miR-4733-3p 0 1 0
chrX:48575652|48575817 hsa-miR-3158-5p 0 1 0
chrX:48575652|48575817 hsa-miR-4646-3p 0 1 0
chrX:48575652|48575817 hsa-miR-3158-3p 1 1 0
chrX:48575652|48575817 hsa-miR-371b-3p 0 1 0
chrX:48575652|48575817 hsa-miR-6775-5p 0 1 0
chrX:48575652|48575817 hsa-miR-6756-5p 1 0 0
chrX:48575652|48575817 hsa-miR-4632-5p 1 0 0
chrX:48575652|48575817 hsa-miR-6791-3p 0 1 0
chrX:48575652|48575817 hsa-miR-10398-5p 1 0 0
chrX:48575652|48575817 hsa-miR-4701-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chrX:48575652|48575817
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MRGLVATLPRADTEGKTKRMKEAADGDKVPLQIGGPTSPFMA
Nucleotide Sequence CTGCGGGGCTTGGTGGCCACGCTGCCCCGAGCAGACACAGAGGGAAAAACAAAAAGAATGAAGGAAGCCGCAGATGGGGACAAGGTCCCTCTGCAGATAGGAGGCCCCACCTCTCCGTTCATGGCT
CircID chrX:48575652|48575817
ORF Type ORF2
Protein Length 38
Nucleotide Length 117
Protein Sequence MQRDLVPICGFLHSFCFSLCVCSGQRGHQAPQCPLTGA
Nucleotide Sequence CTGCAGAGGGACCTTGTCCCCATCTGCGGCTTCCTTCATTCTTTTTGTTTTTCCCTCTGTGTCTGCTCGGGGCAGCGTGGCCACCAAGCCCCGCAGTGCCCACTCACAGGAGCATGA
CircID chrX:48575652|48575817
ORF Type ORF3
Protein Length 52
Nucleotide Length 159
Protein Sequence MNGEVGPPICRGTLSPSAASFILFVFPSVSARGSVATKPRSAHSQEHDCLLF
Nucleotide Sequence ATGAACGGAGAGGTGGGGCCTCCTATCTGCAGAGGGACCTTGTCCCCATCTGCGGCTTCCTTCATTCTTTTTGTTTTTCCCTCTGTGTCTGCTCGGGGCAGCGTGGCCACCAAGCCCCGCAGTGCCCACTCACAGGAGCATGACTGCCTTTTGTTCTAG
CircID chrX:48575652|48575817
ORF Type ORF4
Protein Length 37
Nucleotide Length 111
Protein Sequence MRLPSFFLFFPLCLLGAAWPPSPAVPTHRSMTAFCSR
Nucleotide Sequence CTGCGGCTTCCTTCATTCTTTTTGTTTTTCCCTCTGTGTCTGCTCGGGGCAGCGTGGCCACCAAGCCCCGCAGTGCCCACTCACAGGAGCATGACTGCCTTTTGTTCTAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab