CircRNA Information

General Information
circRNA Basic Information
CircID chrX:48604865|48605082
Strand -
CircType exon
Host Gene ENSG00000101940.16;
Algorism CIRI2;
Sequence ATGTGCGTGCACTTCTTTGATGTGGAGCGGGCGGCCAAGGCTGCTGTCAACAAGCTGCAGGGCCACAGTGCACCTGTGCTTGATGTCAGCTTCAACTGCGACGAGAGCCTACTGGCCTCCAGTGACGCCAGCGGCATGGTCATCGTCTGGAGGCGGGAGCAGAAGTAGGGTCCTGTCGGCCCTGCTGCTGTCCTCCATCCCACCCCTCTTACTCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:48604865|48605082 hsa-miR-15a-5p 0 0 1
chrX:48604865|48605082 hsa-miR-15a-3p 0 0 1
chrX:48604865|48605082 hsa-miR-214-5p 0 0 1
chrX:48604865|48605082 hsa-miR-214-3p 0 0 1
chrX:48604865|48605082 hsa-miR-15b-5p 0 0 1
chrX:48604865|48605082 hsa-miR-15b-3p 0 0 1
chrX:48604865|48605082 hsa-miR-195-5p 0 0 1
chrX:48604865|48605082 hsa-miR-195-3p 0 0 1
chrX:48604865|48605082 hsa-miR-328-5p 0 0 1
chrX:48604865|48605082 hsa-miR-328-3p 0 0 1
chrX:48604865|48605082 hsa-miR-424-5p 0 0 1
chrX:48604865|48605082 hsa-miR-424-3p 0 0 1
chrX:48604865|48605082 hsa-miR-489-5p 0 0 1
chrX:48604865|48605082 hsa-miR-489-3p 0 0 1
chrX:48604865|48605082 hsa-miR-497-5p 0 0 1
chrX:48604865|48605082 hsa-miR-497-3p 0 0 1
chrX:48604865|48605082 hsa-miR-552-5p 0 0 1
chrX:48604865|48605082 hsa-miR-552-3p 0 0 1
chrX:48604865|48605082 hsa-miR-591 0 0 1
chrX:48604865|48605082 hsa-miR-608 1 1 1
chrX:48604865|48605082 hsa-miR-650 0 0 1
chrX:48604865|48605082 hsa-miR-653-5p 0 0 1
chrX:48604865|48605082 hsa-miR-653-3p 0 0 1
chrX:48604865|48605082 hsa-miR-1301-5p 0 0 1
chrX:48604865|48605082 hsa-miR-1301-3p 0 0 1
chrX:48604865|48605082 hsa-miR-765 0 0 1
chrX:48604865|48605082 hsa-miR-1181 0 0 1
chrX:48604865|48605082 hsa-miR-663b 0 1 1
chrX:48604865|48605082 hsa-miR-1291 0 1 1
chrX:48604865|48605082 hsa-miR-1281 0 0 1
chrX:48604865|48605082 hsa-miR-127-5p 0 0 1
chrX:48604865|48605082 hsa-miR-1184 0 1 1
chrX:48604865|48605082 hsa-miR-767-3p 0 0 1
chrX:48604865|48605082 hsa-miR-519b-3p 0 0 1
chrX:48604865|48605082 hsa-miR-519c-3p 0 0 1
chrX:48604865|48605082 hsa-miR-16 0 0 1
chrX:48604865|48605082 hsa-miR-519a 0 0 1
chrX:48604865|48605082 hsa-miR-637 0 1 0
chrX:48604865|48605082 hsa-miR-761 0 1 0
chrX:48604865|48605082 hsa-miR-764 0 1 0
chrX:48604865|48605082 hsa-miR-3131 0 1 0
chrX:48604865|48605082 hsa-miR-3918 0 1 0
chrX:48604865|48605082 hsa-miR-4443 0 1 0
chrX:48604865|48605082 hsa-miR-3135b 0 1 0
chrX:48604865|48605082 hsa-miR-4526 0 1 0
chrX:48604865|48605082 hsa-miR-4534 0 1 0
chrX:48604865|48605082 hsa-miR-4651 1 1 0
chrX:48604865|48605082 hsa-miR-4654 0 1 0
chrX:48604865|48605082 hsa-miR-4739 1 0 0
chrX:48604865|48605082 hsa-miR-5194 0 1 0
chrX:48604865|48605082 hsa-miR-6132 0 1 0
chrX:48604865|48605082 hsa-miR-4433b-3p 1 0 0
chrX:48604865|48605082 hsa-miR-4700-3p 0 1 0
chrX:48604865|48605082 hsa-miR-6894-5p 1 1 0
chrX:48604865|48605082 hsa-miR-6510-5p 0 1 0
chrX:48604865|48605082 hsa-miR-6728-5p 1 1 0
chrX:48604865|48605082 hsa-miR-1236-5p 1 0 0
chrX:48604865|48605082 hsa-miR-6880-5p 0 1 0
chrX:48604865|48605082 hsa-miR-7154-3p 0 1 0
chrX:48604865|48605082 hsa-miR-6890-5p 1 0 0
chrX:48604865|48605082 hsa-miR-4474-3p 1 0 0
chrX:48604865|48605082 hsa-miR-2467-5p 1 0 0
chrX:48604865|48605082 hsa-miR-6881-5p 1 0 0
chrX:48604865|48605082 hsa-miR-6782-5p 1 1 0
chrX:48604865|48605082 hsa-miR-1908-3p 1 1 0
chrX:48604865|48605082 hsa-miR-1237-3p 0 1 0
chrX:48604865|48605082 hsa-miR-6828-3p 0 1 0
chrX:48604865|48605082 hsa-miR-597-3p 0 1 0
chrX:48604865|48605082 hsa-miR-6872-3p 0 1 0
chrX:48604865|48605082 hsa-miR-4632-3p 0 1 0
chrX:48604865|48605082 hsa-miR-5004-5p 0 1 0
chrX:48604865|48605082 hsa-miR-3913-3p 0 1 0
chrX:48604865|48605082 hsa-miR-6812-5p 0 1 0
chrX:48604865|48605082 hsa-miR-6816-5p 1 0 0
chrX:48604865|48605082 hsa-miR-5001-5p 1 0 0
chrX:48604865|48605082 hsa-miR-6756-5p 1 1 0
chrX:48604865|48605082 hsa-miR-6803-5p 1 0 0
chrX:48604865|48605082 hsa-miR-6819-5p 1 1 0
chrX:48604865|48605082 hsa-miR-6722-3p 1 0 0
chrX:48604865|48605082 hsa-miR-10526-3p 1 0 0
chrX:48604865|48605082 hsa-miR-4745-5p 1 0 0
chrX:48604865|48605082 hsa-miR-6735-5p 0 1 0
chrX:48604865|48605082 hsa-miR-6738-5p 0 1 0
chrX:48604865|48605082 hsa-miR-6848-5p 1 0 0
chrX:48604865|48605082 hsa-miR-4758-5p 1 0 0
chrX:48604865|48605082 hsa-miR-4769-5p 0 1 0
chrX:48604865|48605082 hsa-miR-3198 1 0 0
chrX:48604865|48605082 hsa-miR-6799-3p 0 1 0
chrX:48604865|48605082 hsa-miR-4691-5p 0 1 0
chrX:48604865|48605082 hsa-miR-3619-5p 0 1 0
chrX:48604865|48605082 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:48604865|48605082
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MCVHFFDVERAAKAAVNKLQGHSAPVLDVSFNCDESLLASSDASGMVIVWRREQK
Nucleotide Sequence ATGTGCGTGCACTTCTTTGATGTGGAGCGGGCGGCCAAGGCTGCTGTCAACAAGCTGCAGGGCCACAGTGCACCTGTGCTTGATGTCAGCTTCAACTGCGACGAGAGCCTACTGGCCTCCAGTGACGCCAGCGGCATGGTCATCGTCTGGAGGCGGGAGCAGAAGTAG
CircID chrX:48604865|48605082
ORF Type ORF2
Protein Length 67
Nucleotide Length 201
Protein Sequence MMWSGRPRLLSTSCRATVHLCLMSASTATRAYWPPVTPAAWSSSGGGSRSRVLSALLLSSIPPLLLQ
Nucleotide Sequence TTGATGTGGAGCGGGCGGCCAAGGCTGCTGTCAACAAGCTGCAGGGCCACAGTGCACCTGTGCTTGATGTCAGCTTCAACTGCGACGAGAGCCTACTGGCCTCCAGTGACGCCAGCGGCATGGTCATCGTCTGGAGGCGGGAGCAGAAGTAGGGTCCTGTCGGCCCTGCTGCTGTCCTCCATCCCACCCCTCTTACTCCAG
CircID chrX:48604865|48605082
ORF Type ORF3
Protein Length 47
Nucleotide Length 141
Protein Sequence MTMPLASLEASRLSSQLKLTSSTGALWPCSLLTAALAARSTSKKCTH
Nucleotide Sequence ATGACCATGCCGCTGGCGTCACTGGAGGCCAGTAGGCTCTCGTCGCAGTTGAAGCTGACATCAAGCACAGGTGCACTGTGGCCCTGCAGCTTGTTGACAGCAGCCTTGGCCGCCCGCTCCACATCAAAGAAGTGCACGCAC
CircID chrX:48604865|48605082
ORF Type ORF4
Protein Length 29
Nucleotide Length 90
Protein Sequence MEDSSRADRTLLLLPPPDDDHAAGVTGGQ
Nucleotide Sequence ATGGAGGACAGCAGCAGGGCCGACAGGACCCTACTTCTGCTCCCGCCTCCAGACGATGACCATGCCGCTGGCGTCACTGGAGGCCAGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab