CircRNA Information

General Information
circRNA Basic Information
CircID chrX:49029095|49029352
Strand +
CircType exon
Host Gene ENSG00000068323.15;
Algorism CIRI2;
Sequence CTGACCTAACCTAGGAGGGCTCTGAGCCAACCTTGCTCTTGGGGAAGGGGACAGATTATGAAATTTCATGGATGAATTTTCCAGACCTATATCTGGAGTGAGAGGCCCCCACCCTTGGGCAGAGTCCTGCCTTCTTCCTTGAGGGGCAGTTTGGGAAGGTGATGGGTATTAGTGGGGGACTGAGTTCAGGTTACCAGAACCAGTACCTCAGTATTCTTTTTCAACATGTAGGGCAAGAGGATGAAGGAAGGGGCTATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chrX:49029095|49029352 hsa-let-7b-5p 0 0 1
chrX:49029095|49029352 hsa-let-7b-3p 0 0 1
chrX:49029095|49029352 hsa-let-7c-5p 0 0 1
chrX:49029095|49029352 hsa-let-7c-3p 0 0 1
chrX:49029095|49029352 hsa-let-7d-5p 0 0 1
chrX:49029095|49029352 hsa-let-7d-3p 0 0 1
chrX:49029095|49029352 hsa-let-7e-5p 0 0 1
chrX:49029095|49029352 hsa-let-7e-3p 0 0 1
chrX:49029095|49029352 hsa-miR-98-5p 0 0 1
chrX:49029095|49029352 hsa-miR-98-3p 0 0 1
chrX:49029095|49029352 hsa-miR-205-5p 0 0 1
chrX:49029095|49029352 hsa-miR-205-3p 0 0 1
chrX:49029095|49029352 hsa-miR-200b-5p 0 0 1
chrX:49029095|49029352 hsa-miR-200b-3p 0 0 1
chrX:49029095|49029352 hsa-let-7g-5p 0 0 1
chrX:49029095|49029352 hsa-let-7g-3p 0 0 1
chrX:49029095|49029352 hsa-let-7i-5p 0 0 1
chrX:49029095|49029352 hsa-let-7i-3p 0 0 1
chrX:49029095|49029352 hsa-miR-154-5p 0 0 1
chrX:49029095|49029352 hsa-miR-154-3p 0 0 1
chrX:49029095|49029352 hsa-miR-186-5p 0 0 1
chrX:49029095|49029352 hsa-miR-186-3p 0 0 1
chrX:49029095|49029352 hsa-miR-200c-5p 0 0 1
chrX:49029095|49029352 hsa-miR-200c-3p 0 0 1
chrX:49029095|49029352 hsa-miR-335-5p 0 0 1
chrX:49029095|49029352 hsa-miR-335-3p 0 0 1
chrX:49029095|49029352 hsa-miR-429 0 0 1
chrX:49029095|49029352 hsa-miR-202-5p 0 0 1
chrX:49029095|49029352 hsa-miR-202-3p 0 0 1
chrX:49029095|49029352 hsa-miR-649 0 0 1
chrX:49029095|49029352 hsa-miR-653-5p 0 0 1
chrX:49029095|49029352 hsa-miR-653-3p 0 0 1
chrX:49029095|49029352 hsa-miR-660-5p 0 0 1
chrX:49029095|49029352 hsa-miR-660-3p 0 0 1
chrX:49029095|49029352 hsa-miR-874-5p 0 0 1
chrX:49029095|49029352 hsa-miR-874-3p 0 0 1
chrX:49029095|49029352 hsa-miR-940 0 1 1
chrX:49029095|49029352 hsa-miR-1286 0 0 1
chrX:49029095|49029352 hsa-miR-1299 0 0 1
chrX:49029095|49029352 hsa-miR-490-3p 0 0 1
chrX:49029095|49029352 hsa-miR-508-5p 0 0 1
chrX:49029095|49029352 hsa-miR-361-3p 0 0 1
chrX:49029095|49029352 hsa-miR-875-3p 0 0 1
chrX:49029095|49029352 hsa-miR-324-3p 0 0 1
chrX:49029095|49029352 hsa-miR-483-3p 0 0 1
chrX:49029095|49029352 hsa-miR-455-3p 0 0 1
chrX:49029095|49029352 hsa-miR-513a-3p 0 0 1
chrX:49029095|49029352 hsa-miR-1233 0 0 1
chrX:49029095|49029352 hsa-let-7a 0 0 1
chrX:49029095|49029352 hsa-let-7f 0 0 1
chrX:49029095|49029352 hsa-miR-24 0 0 1
chrX:49029095|49029352 hsa-miR-3185 0 1 0
chrX:49029095|49029352 hsa-miR-3714 0 1 0
chrX:49029095|49029352 hsa-miR-4522 0 1 0
chrX:49029095|49029352 hsa-miR-12125 0 1 0
chrX:49029095|49029352 hsa-miR-92a-2-5p 0 1 0
chrX:49029095|49029352 hsa-miR-6881-3p 0 1 0
chrX:49029095|49029352 hsa-miR-3189-5p 1 0 0
chrX:49029095|49029352 hsa-miR-6760-5p 0 1 0
chrX:49029095|49029352 hsa-miR-6782-5p 1 0 0
chrX:49029095|49029352 hsa-miR-3667-5p 1 0 0
chrX:49029095|49029352 hsa-miR-6884-3p 1 1 0
chrX:49029095|49029352 hsa-miR-6803-3p 1 0 0
chrX:49029095|49029352 hsa-miR-6878-3p 0 1 0
chrX:49029095|49029352 hsa-miR-5196-3p 0 1 0
chrX:49029095|49029352 hsa-miR-6830-5p 1 1 0
chrX:49029095|49029352 hsa-miR-6769a-3p 1 1 0
chrX:49029095|49029352 hsa-miR-4687-5p 0 1 0
chrX:49029095|49029352 hsa-miR-2114-5p 0 1 0
chrX:49029095|49029352 hsa-miR-6814-5p 0 1 0
chrX:49029095|49029352 hsa-miR-5088-3p 1 0 0
chrX:49029095|49029352 hsa-miR-6734-3p 0 1 0
chrX:49029095|49029352 hsa-miR-6756-5p 1 0 0
chrX:49029095|49029352 hsa-miR-3127-3p 0 1 0
chrX:49029095|49029352 hsa-miR-6848-5p 1 0 0
chrX:49029095|49029352 hsa-miR-6877-3p 1 0 0
chrX:49029095|49029352 hsa-miR-6876-5p 0 1 0
chrX:49029095|49029352 hsa-miR-6766-5p 0 1 0
chrX:49029095|49029352 hsa-miR-6756-3p 1 1 0
chrX:49029095|49029352 hsa-miR-6823-3p 1 0 0
chrX:49029095|49029352 hsa-miR-6744-3p 0 1 0
chrX:49029095|49029352 hsa-miR-514b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chrX:49029095|49029352
ORF Type ORF1
Protein Length 32
Nucleotide Length 96
Protein Sequence MGISGGLSSGYQNQYLSILFQHVGQEDEGRGY
Nucleotide Sequence ATGGGTATTAGTGGGGGACTGAGTTCAGGTTACCAGAACCAGTACCTCAGTATTCTTTTTCAACATGTAGGGCAAGAGGATGAAGGAAGGGGCTAT
CircID chrX:49029095|49029352
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MENSSMKFHNLSPSPRARLAQSPPRLGQ
Nucleotide Sequence CTGGAAAATTCATCCATGAAATTTCATAATCTGTCCCCTTCCCCAAGAGCAAGGTTGGCTCAGAGCCCTCCTAGGTTAGGTCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab